Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702615
.1_202016-08-10] 3,557 sequences; 56,803,069 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq2893 264 1e-65
seq3041 147 3e-30
>seq2893
Length=1271672
Score = 264 bits (292), Expect = 1e-65
Identities = 1144/1783 (64%), Gaps = 41/1783 (2%)
Strand=Plus/Minus
Query 104221 CCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGT 104280
||| ||| ||||| ||||||| ||| | | |||||| || || || || || ||
Sbjct 1165207 CCCTCAGCACATGATCATGCGTGTGTCTGTTGGTATTTGGGGTGATGATATCGAGCGAGT 1165148
Query 104281 CTTGGAGACATACGACAAGATGTCCCAAGGTA--TGTTCATTCACGCAACACCAACCCTC 104338
||||||||||||| || ||||||| || | | |||| || || | || || |||
Sbjct 1165147 CTTGGAGACATACAACCTGATGTCC--AGCAAATTCTTCACACATGCCTCTCCCACGCTC 1165090
Query 104339 TTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAG 104398
||||| || || || || |||||| |||| ||||||| | | | | |||||
Sbjct 1165089 TTCAACGCCGGCACCCCTCAGCCCCAATTGTCATCTTGCTTCTTGGTTGATATGAAGGAC 1165030
Query 104399 GACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCT 104458
||| || | || ||||| | ||||| | | ||||| ||||| ||| ||||
Sbjct 1165029 GACAGTATTGAGGGAATCTACGATACTCTCAAGACCTGTGCCATGATCTCCAAGATGGCT 1164970
Query 104459 GGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTAT-TCGGGGG-A 104516
|| |||||||| || || | || | | | || | | ||| ||| ||| || |
Sbjct 1164969 GGTGGTATTGGTCTGAACGTGCACCGTATCCGTGCTACTGG--CTCCTATATCGCCGGTA 1164912
Query 104517 CAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCT 104576
| || ||| ||| | ||| || |||| |||||||| || || ||| ||| || ||||
Sbjct 1164911 CCAACGGTACATCGAACGGTGTTGTTCCTATGCTTCGTGTCTTCAACAACACTGCTCGCT 1164852
Query 104577 ATGTAAATCAAGCTGGGCGT---CGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGC 104633
|||| | || | ||| ||| || || | || |||| || ||||| ||||
Sbjct 1164851 ATGTCGACCAGGGTGGCAACAAGCGACCCGGTGCTTTTGCCATCTACCTCGAGCCTTGGC 1164792
Query 104634 ACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGT 104693
|| | ||| || | ||||||||||| | ||| ||||| ||| | ||||||| ||
Sbjct 1164791 ACTCTGATGTCTTCGAGTTCCTTGATCTCCGTAAGAACCACGGTAAAGAGGAGGTCCGTG 1164732
Query 104694 GCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGA 104753
||| || || ||| ||| || ||||| || ||||| ||||||||| | ||||| |||
Sbjct 1164731 CCCGTGACCTTTTCCTCGCCCTTTGGATCCCTGATCTTTTCATGAAGCGTGTTGAAAAGA 1164672
Query 104754 GTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTG 104813
||| | ||| | || | || || || || ||||| ||| |||| | || |
Sbjct 1164671 ACGGCGACTGGACGCTGATGTGCCCCAACGAGTGCCCTGGCCTCGCCGACTGCTACGGAG 1164612
Query 104814 AGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGC--GACGGT 104871
||||||| || || || ||| ||||||||| |||| ||| | | | | || ||| |
Sbjct 1164611 AGGAGTTCGAGGCTCTGTACGAAAAGTACGA-GAAGGAGGGCAAGGGTC-GCAAGACTAT 1164554
Query 104872 GCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATA 104931
||| | | ||| | || ||||| || | || || ||||| || | ||||
Sbjct 1164553 CAAGGCTCAGAAACTTTGGTACGCCATTCTTGAGGCCCAGACTGAGACCGGAAACCCATT 1164494
Query 104932 CATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAA 104991
|||||| ||||| || ||||| |||| ||||| || |||||||| | ||| |||
Sbjct 1164493 CATGCTCTACAAGGATGCCTGCAACCGCAAGAGCAACCAAAAGAACCTCGGTACCATCCG 1164434
Query 104992 GAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTG 105051
|| ||||| || || || ||||| | || | | | || ||| ||||| ||
Sbjct 1164433 AAGCTCCAACCTGTGCACTGAAATTATTGAGTACTGTGCCCCTGACGAGGTCGCTGTCTG 1164374
Query 105052 TAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTT----- 105106
||||| || || | ||||| ||| | | | || || || | || ||
Sbjct 1164373 CAACCTTGCCTCTCTGGCTCTGCCC---TCT-TTCAT-CAACTACGATGAGGCTTGCTAC 1164319
Query 105107 GATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATT 105166
|| | | || | ||| | || | | ||| | ||||| |||| | ||
Sbjct 1164318 GACTTCAAGAAGTTGCACAAGGTCAGTCAGGTTGTTATTCGCAACCTGAACAAGATCATC 1164259
Query 105167 GATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATT 105226
||| || ||||| || || ||||| || ||| ||| | ||||| || |||
Sbjct 1164258 GATGTGAACCACTACCCTGTCCAGGAGGCTCGCAACAGTAACATGCGCCACCGACCCATT 1164199
Query 105227 GGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATT-CTTTGTCGCCACGCATTTGATTC 105285
||||| ||||||||||| || || |||| ||| || || || ||| | || || ||
Sbjct 1164198 GGTCTTGGTGTTCAGGGCCTTGCCGATGCTTTCCTTGCTCTG-CGCATGCCCTTCGAGTC 1164140
Query 105286 CGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGA 105345
||| || || |||| || || || |||||||| || ||||| || ||
Sbjct 1164139 ACCCGAGGCTCGTGAGCTCAACAAGCAGATCTTCGAGACCATTTACCACGCTGCCCTCAC 1164080
Query 105346 GGC--GAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCA 105403
|| || | || |||| ||| || ||||| || ||||| | ||||| ||
Sbjct 1164079 TGCCTCCGTGC--AGCTGGCTAAGGAGGAGGGTCCCTACTCCACCTTCAAAGGTTCCCCC 1164022
Query 105404 GCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACTACGAC 105463
|| || | || | || || || || |||||| | | || || | || |||
Sbjct 1164021 GCCTCTGAGGGTATCCTCCAGTTCGACATGTGGAACGTCAAGCCCTCTGACCTCTGGGAC 1163962
Query 105464 TGGGAAGCTC-TCAAG-GAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGG 105521
||||| ||| || || | | | ||||| | || | ||||||||||| ||| | |
Sbjct 1163961 TGGGAGACTCTTCGAGAGGAAG--TCAAGACACACGGCATCCGTAACAGTCTGCTCCTTG 1163904
Query 105522 CTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCT 105581
|||| ||||| || ||| ||| | || || |||| || || || ||||| || ||||
Sbjct 1163903 CTCCTATGCCTACTGCCAGTACCTCCCAGATTCTGGGCAACAACGAGTGCTTCGAGCCCT 1163844
Query 105582 ACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGC 105641
|||| | |||||||| | || | ||||| || ||||| | ||||||||
Sbjct 1163843 ACACCTCCAACATCTACCAACGACGTGTTCTCGCTGGTGAGTTCCAGGTTGTCAACCCCT 1163784
Query 105642 ATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCATGG 105701
|| | | ||||| || || ||||| |||||| | | ||||||| | | |||
Sbjct 1163783 GGCTGCTCAAGGACCTTGTCGACATGGGTCTGTGGTCCGATGCTATGAAGAACCGCATCA 1163724
Query 105702 TGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAAATGAAATTAAGAAGTTGT 105761
| | | |||||||||||| || ||| | || || || | ||| |||
Sbjct 1163723 TTGCTGAGAATGGTTCCATTCAGAACATTCCCAACATCCCTGCCGATGTCAAGGCTCTGT 1163664
Query 105762 ACCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTGACATGGCCGCAGATCGTGGTC 105821
| || |||||||| ||| | | ||| || | ||||| || ||||| |||
Sbjct 1163663 ATAAGACCGTTTGGGAGATCTCTCAGCGCCAAGTCGTTCAGATGGCTGCTGATCGAGGTG 1163604
Query 105822 GCTTCATTGATCAAAGTCAAAGT--ATGAATCTCTTCATGGAAAGTCCAACGATGTCCAA 105879
||||||||||| |||| ||| |||| || |||| || || |||||| |||
Sbjct 1163603 CCTTCATTGATC--AGTCCCAGTCACTGAACATCCACATGAAAGACCCCACGATGGGCAA 1163546
Query 105880 GCTCTCTTCTATGCACATGTACA-GTTGGAAGAAGGGTCTCAAAACGGGGATGTATTACC 105938
| || | ||||||| | | || | |||||| || ||||| || || ||||| ||||
Sbjct 1163545 GATCACCAGTATGCAC-TTTGCAGGCTGGAAGCTTGGCCTCAAGACTGGCATGTACTACC 1163487
Query 105939 TCCGATCTAAGGCAAAGGCGCGCCCAATTCAGTTCAGTCTTGA 105981
| || | |||| || || |||||||||| | ||||
Sbjct 1163486 TTCGTACACAGGCTGCTGCTGCTCCTATTCAGTTCACTGTTGA 1163444
>seq3041
Length=162509
Score = 147 bits (162), Expect = 3e-30
Identities = 180/243 (74%), Gaps = 2/243 (1%)
Strand=Plus/Minus
Query 94714 CTCTTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAG 94773
|||||| | ||||| | || | || || || | |||||| || || ||||| ||
Sbjct 155134 CTCTTTAACGCCATTGAGACCATCCCCTGCATCCGAAAGAAGGCCGACTGGGCCATCCGA 155075
Query 94774 TGGTTTGAT-ACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGA 94832
||| | | | || | | | | ||||||| |||| ||| | || || || ||||||
Sbjct 155074 TGGATCCAGGATAAGGACTCCT-CCTTTGCCCAGCGTCTCGTTGCTTTCGCTGCTGTTGA 155016
Query 94833 GGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCAT 94892
||||||||||||| |||| ||||| | |||| | |||||||||||||| ||||||||
Sbjct 155015 GGGTATCTTCTTCAGTGGTGCCTTCGCCTCTATCTTCTGGCTCAAGAAGCGTGGTCTCAT 154956
Query 94893 GCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTT 94952
||| ||||| ||||||||||||||| ||||||||||| ||||| || ||| || ||
Sbjct 154955 GCCCGGTCTGACCTTCTCCAACGAGCTCATCTCTCGTGATGAGGGTCTTCACACTGACTT 154896
Query 94953 TGC 94955
|||
Sbjct 154895 TGC 154893
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583234866766680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |