Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702615
.1_202016-08-10] 3,557 sequences; 56,803,069 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq102 96.9 2e-15
>seq102
Length=1299131
Score = 96.9 bits (106), Expect = 2e-15
Identities = 107/143 (75%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| || | |||||| | ||||| |||||||| ||||| |||||||| || || |||
Sbjct 988014 CCACCACGAAGACGGAGAACCAAGTGGAGAGTAGATTCCTTCTGAATGTTGTAGTCGGAA 987955
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
|| ||||| | ||||||||||| || || || || || | |||||||| || || ||
Sbjct 987954 AGAGTTCGGCCATCTTCAAGTTGCTTGCCAGCGAAGATGAGTCGCTGTTGATCGGGAGGA 987895
Query 34600 ACTCCCTCCTTGTCTGTGATCTT 34622
| ||||||||||| ||||||
Sbjct 987894 ATACCCTCCTTGTCCTGGATCTT 987872
Score = 86.0 bits (94), Expect = 4e-12
Identities = 147/212 (69%), Gaps = 10/212 (5%)
Strand=Plus/Minus
Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563
|| |||||| |||||| |||||||| ||||| || || || || |||| ||||| ||
Sbjct 987480 TGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGAGAGAGTGCGGCCGTCCTCAAGCTGC 987421
Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTT- 34622
|| ||||| || || || || || ||||| || || | ||||||||||| |||||
Sbjct 987420 TTGCCGGCGAAAATCAAGCGTTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGAATCTTG 987361
Query 34623 ---TTG-TTTTAACGATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTAC 34678
||| || ||||| ||||| ||| || || | ||| || || || |
Sbjct 987360 GACTTGACATTGTCGATA-----GTGTCGGAAGACTCAACCTCGAGGGTGATGGTCTTGC 987306
Query 34679 CGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710
|||| || || || || || ||||||||| ||
Sbjct 987305 CGGTCAAGGTCTTGACGAAGATCTGCATGATG 987274
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 314715956176781
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |