Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702615
.1_202016-08-10] 3,557 sequences; 56,803,069 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq102 172 1e-37
seq579 168 1e-36
seq3046 147 5e-30
seq3041 122 2e-22
seq3015 84.2 5e-11
>seq102
Length=1299131
Score = 172 bits (190), Expect = 1e-37
Identities = 175/228 (77%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| ||||| || || || || | ||| || || || |||||||| ||||
Sbjct 987505 ACCACCACGGAGGCGGAGAACAAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGA 987446
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| |||||||| ||||| || || || ||||| || ||||| ||||| ||||| ||
Sbjct 987445 GAGAGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAAATCAAGCGTTGCTGGTCGGGGGG 987386
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
||| ||||||||||| || ||||| | || || | ||||||||||| |||| || ||
Sbjct 987385 AATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATAGTGTCGGAAGACTCAAC 987326
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
||||| ||||| ||||| || ||||| ||||| ||||| ||||||||
Sbjct 987325 CTCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 987278
Score = 158 bits (174), Expect = 3e-33
Identities = 168/222 (76%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| ||||| || || ||||| | || ||| || || ||||||||||| ||
Sbjct 987787 ACCACCACGGAGGCGGAGGACGAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCGGC 987728
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
||| || |||||||| || ||||| || || |||||||||| ||| || |||||| ||
Sbjct 987727 AAGGGTTCGGCCATCTTCGAGTTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCAGGAGG 987668
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
|| ||||||||||| || ||||||| || || | ||||| || || || | |||||
Sbjct 987667 GATGCCCTCCTTGTCCTGAATCTTTGACTTAACATTGTCGATGGTATCGGACGACTCGAC 987608
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATAT 283093
|| || ||||| ||||| || || | ||||| |||| |||
Sbjct 987607 CTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACGACTAT 987566
Score = 145 bits (160), Expect = 2e-29
Identities = 171/229 (75%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| || || || |||| || | || ||| || || ||||||||||| |
Sbjct 988015 ACCACCACGAAGACGGAGAACCAAGTGGAGAGTAGATTCCTTCTGAATGTTGTAGTCGGA 987956
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
||| || |||||||| || ||||| || || || ||||| | || ||||| || ||
Sbjct 987955 AAGAGTTCGGCCATCTTCAAGTTGCTTGCCAGCGAAGATGAGTCGCTGTTGATCGGGAGG 987896
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050
||||||||||||||| |||||| ||||| || || |||| || || || || | ||||
Sbjct 987895 AATACCCTCCTTGTCCTGGATC-TTGCTCTTCACATTATCAATGGTATCGGATGACTCGA 987837
Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|||| ||||| || ||||| || || | ||||| ||||| || |||||
Sbjct 987836 CTTCCAGAGTAATGGTCTTTCCAGTGAGGGTCTTGACGAAGATTTGCAT 987788
Score = 129 bits (142), Expect = 1e-24
Identities = 169/229 (74%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG-C 282931
||||| || || || || || || || | || || || |||||||||||||| |
Sbjct 988242 CCACCGCGAAGTCGGAGAACGAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAGTCGCTC 988183
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
||| ||||| ||||| || | || || || || ||||| | ||| ||||| ||| ||
Sbjct 988182 AAG-GTGCGACCATCTTCCAACTGCTTACCAGCGAAGATAAGACGCTGTTGATCAGGGGG 988124
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTT-ACGGTATCGATAGTGTCCGAAGCTTCGA 283050
||||||||||||||| || ||||| ||| || ||| | ||||||||||| | ||||
Sbjct 988123 AATACCCTCCTTGTCCTGAATCTT-GCTCTTCACGTTGTCGATAGTGTCACTGGACTCGA 988065
Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
| || || ||||| ||||| || || | |||||| || || ||||||||
Sbjct 988064 CCTCAAGGGTGATGGTCTTTCCGGTGAGAGTCTTCACAAAAATCTGCAT 988016
>seq579
Length=310369
Score = 168 bits (186), Expect = 1e-36
Identities = 176/231 (76%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| ||||| || ||||| || | ||| || || ||||||||||||||
Sbjct 279203 ACCACCACGGAGGCGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCT 279262
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| ||||| |||||||| || || || || |||||||| | || || |||||| ||
Sbjct 279263 CAGGGTGCGTCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGG 279322
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
|| ||||||||||| |||||||| | || ||| | ||||| ||||| |||| || ||
Sbjct 279323 GATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCAC 279382
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102
|| || ||||||||||| ||||| | ||||| ||||| |||||||| ||
Sbjct 279383 CTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTT 279433
>seq3046
Length=363889
Score = 147 bits (162), Expect = 5e-30
Identities = 140/179 (78%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971
|| |||||||||||||| | || || ||||||||||| || || || || || ||||||
Sbjct 198991 TTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCGAGCTGCTTACCAGCGAAGATC 198932
Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031
| || |||||||| ||||| ||||||||||| |||||||| | || || | |||
Sbjct 198931 AGTCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 198872
Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090
|| |||||||| | ||||| ||||| ||||| ||||| ||||||| ||||| |||||
Sbjct 198871 ATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 198813
>seq3041
Length=162509
Score = 122 bits (134), Expect = 2e-22
Identities = 159/220 (72%), Gaps = 0/220 (0%)
Strand=Plus/Minus
Query 230191 AGGAGTTCATTTGCGACGCTATTCCTTGCCGTCTTATCGGCATGAATGCTGATCTCATGG 230250
|||||||| | || ||| |||| || ||| |||||||||| |||| ||||||
Sbjct 154809 AGGAGTTCCTCACTGAGGCTCTTCCCTGTGCCCTTCTCGGCATGAACTCTGACCTCATGA 154750
Query 230251 GGCAATATATCGAATTCGTAGCTGATCGTATTTTCGTGGCGCTAGGGTACGAGAAAGTGT 230310
||| || || || ||||| ||||||||| | | || ||||| || ||||||| || |
Sbjct 154749 AGCAGTACATTGAGTTCGTCGCTGATCGTCTCCTTGTCGCGCTTGGCAACGAGAAGGTTT 154690
Query 230311 ATAACTCCAAGAACCCCTTCGCTTTTATGGAGCTCATTTCACTCCAGGGGAAAACTAACT 230370
| || ||| |||||||||| || |||||| ||| || || || || || ||||
Sbjct 154689 ACAAGGCCACCAACCCCTTCGACTTCATGGAGAACATCTCCCTTGGTGGCAAGACCAACT 154630
Query 230371 TCTTCGAAAAGCGTGTCAGCGATTATCAAAGGCCCGGTGT 230410
||||||| |||||||| ||| || || | | |||||||
Sbjct 154629 TCTTCGAGAAGCGTGTTGCCGACTACCAGAAGGCCGGTGT 154590
>seq3015
Length=715727
Score = 84.2 bits (92), Expect = 5e-11
Identities = 122/170 (72%), Gaps = 2/170 (1%)
Strand=Plus/Plus
Query 315667 ACCCCACCTCCGAAATTCTTAAGCGCCTCTGCCATGGCACCGAGACTCTCGCGGTCCACA 315726
|| ||||| |||| ||||| | |||| | || |||||||||| || || || | |
Sbjct 336256 ACACCACCCTCGAACTTCTTCAAGGCCTTGGACAGGGCACCGAGAGAGTCACGATCGAGA 336315
Query 315727 AAGTTGGTCGGCTCATCAAGAACGATGACGTGGGGTTGTTGCCATAGAGCG-GCGCCGAT 315785
||||||| ||||| ||||| ||||| | || ||| | ||||| ||||| ||| | |
Sbjct 336316 TAGTTGGTAGGCTCGTCAAGGACGATAAGATGAGGTCGCTGCCA-AGAGCAAGCGGCAAG 336374
Query 315786 AACGAGCTTTAGTTTTTGCCCACCAGACAGTCCACGGATGCGAGAATGAG 315835
|| ||| | || ||||||||||| ||||| |||||||| ||||
Sbjct 336375 GACAGTCTTGACACGCTGACCACCAGACAGACCACGCATGCGAGAGTGAG 336424
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1046691495842278
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |