Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702615
.1_202016-08-10] 3,557 sequences; 56,803,069 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq579 143 2e-29
seq102 143 2e-29
seq3046 129 5e-25
>seq579
Length=310369
Score = 143 bits (158), Expect = 2e-29
Identities = 172/231 (74%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || || || | ||||| || || ||| ||||||||| ||||| ||||||
Sbjct 279204 CCACCACGGAGGCGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTC 279263
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|||||||| | || |||||||||||||| || || || || ||||| ||||| | |||
Sbjct 279264 AGGGTGCGTCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGG 279323
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| || |||||||||| ||| || ||| ||| | | | |||||| ||||||||
Sbjct 279324 ATGCCCTCCTTGTCCTGGATCTTGGACTT-GACGTTGTCGATGGTGTCGGAAGACTCCAC 279382
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865
||| | || ||||| || ||||| || ||||| |||||||||||||| ||
Sbjct 279383 CTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTT 279433
>seq102
Length=1299131
Score = 143 bits (158), Expect = 2e-29
Identities = 186/251 (74%), Gaps = 7/251 (3%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || || || | || || || || ||| ||||||||||||||| || || |||
Sbjct 987504 CCACCACGGAGGCGGAGAACAAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGAG 987445
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| ||||| |||| || ||||||||||||||||| |||| ||| || ||||| | ||||
Sbjct 987444 AGAGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAAATCAAGCGTTGCTGGTCGGGGGGA 987385
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTT--CAACGACGACACAGTGTCGCTCGACTCC 41812
| || |||||||||| ||| | || | ||| || | || | ||||||| |||||
Sbjct 987384 ATGCCCTCCTTGTCC-TGAATCTTGGACTTGACATTGTCG--ATAGTGTCGGAAGACTCA 987328
Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTTATCGATG 41872
||||| | || || || || || |||| ||||| ||||| ||||||||| | || |
Sbjct 987327 ACCTCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCATGATGGCGGT- 987269
Query 41873 GATCTCGCGCG 41883
||||| ||||
Sbjct 987268 GATCTGTCGCG 987258
Score = 118 bits (130), Expect = 1e-21
Identities = 165/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
||| ||||| || || | || || || || || ||||||||| ||||| ||||||
Sbjct 988243 GCCACCGCGAAGTCGGAGAACGAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAGTCGCT 988184
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
| |||||| | || || | |||||| || ||||| || || |||||||| || | |||
Sbjct 988183 CAAGGTGCGACCATCTTCCAACTGCTTACCAGCGAAGATAAGACGCTGTTGATCAGGGGG 988124
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813
|| | |||||||||| || || ||||| || | | | |||||| || ||||| |
Sbjct 988123 AATACCCTCCTTGTCCTGAATCTTGCTCTTCA-CGTTGTCGATAGTGTCACTGGACTCGA 988065
Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|||| | || || || || || || || ||||| || |||||||||||
Sbjct 988064 CCTCAAGGGTGATGGTCTTTCCGGTGAGAGTCTTCACAAAAATCTGCAT 988016
Score = 102 bits (112), Expect = 8e-17
Identities = 155/218 (71%), Gaps = 2/218 (1%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || || || | || ||||| || || |||||||||||||| |||||||
Sbjct 987786 CCACCACGGAGGCGGAGGACGAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCGGCA 987727
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
||||| || | || ||||| ||||| || || || ||||| ||||| ||||| | ||
Sbjct 987726 AGGGTTCGGCCATCTTCGAGTTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGG 987667
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| || |||||||||| ||| | |||| | ||| | | | || ||| |||||| ||
Sbjct 987666 ATGCCCTCCTTGTCC-TGAATCTTTGACTTAACATTGTCGATGGTATCGGACGACTCGAC 987608
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGA 41852
||| | || || || || || || || ||||| ||||
Sbjct 987607 CTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACGA 987570
Score = 102 bits (112), Expect = 8e-17
Identities = 161/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | |||| || || || |||||||||||||| ||||||||
Sbjct 988014 CCACCACGAAGACGGAGAACCAAGTGGAGAGTAGATTCCTTCTGAATGTTGTAGTCGGAA 987955
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| || || | || || || |||||||| ||||| || || |||||||| || | |||
Sbjct 987954 AGAGTTCGGCCATCTTCAAGTTGCTTGCCAGCGAAGATGAGTCGCTGTTGATCGGGAGGA 987895
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCA-ACGACGACACAGTGTCGCTCGACTCCAC 41814
| | |||||||||| ||| || ||||| | | | | || ||| ||||| ||
Sbjct 987894 ATACCCTCCTTGTCCTGGATCTTGCTCTTCACATTATCA-ATGGTATCGGATGACTCGAC 987836
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|||| || || || || || || || ||||| ||||| || |||||
Sbjct 987835 TTCCAGAGTAATGGTCTTTCCAGTGAGGGTCTTGACGAAGATTTGCAT 987788
>seq3046
Length=363889
Score = 129 bits (142), Expect = 5e-25
Identities = 140/184 (76%), Gaps = 4/184 (2%)
Strand=Plus/Minus
Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732
||||||| ||||| ||||||||||| || || | || ||||||||||| || ||||| |
Sbjct 198993 CCTTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCGAGCTGCTTACCAGCGAAGA 198934
Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGA 41790
|||| ||||||||||||| ||||| || |||||||||| ||| || ||| || |
Sbjct 198933 TCAGTCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 198874
Query 41791 CGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850
|| | ||||| ||||| ||||| | || || || || |||||||| ||||| ||
Sbjct 198873 CG--ATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCAC 198816
Query 41851 GAAA 41854
||||
Sbjct 198815 GAAA 198812
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462283444808400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |