Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702615 .1_202016-08-10] 3,557 sequences; 56,803,069 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq579 143 2e-29 seq102 143 2e-29 seq3046 129 5e-25 >seq579 Length=310369 Score = 143 bits (158), Expect = 2e-29 Identities = 172/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | ||||| || || ||| ||||||||| ||||| |||||| Sbjct 279204 CCACCACGGAGGCGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTC 279263 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || |||||||||||||| || || || || ||||| ||||| | ||| Sbjct 279264 AGGGTGCGTCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGG 279323 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||||||| ||| || ||| ||| | | | |||||| |||||||| Sbjct 279324 ATGCCCTCCTTGTCCTGGATCTTGGACTT-GACGTTGTCGATGGTGTCGGAAGACTCCAC 279382 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||| | || ||||| || ||||| || ||||| |||||||||||||| || Sbjct 279383 CTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTT 279433 >seq102 Length=1299131 Score = 143 bits (158), Expect = 2e-29 Identities = 186/251 (74%), Gaps = 7/251 (3%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | || || || || ||| ||||||||||||||| || || ||| Sbjct 987504 CCACCACGGAGGCGGAGAACAAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGAG 987445 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| |||| || ||||||||||||||||| |||| ||| || ||||| | |||| Sbjct 987444 AGAGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAAATCAAGCGTTGCTGGTCGGGGGGA 987385 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTT--CAACGACGACACAGTGTCGCTCGACTCC 41812 | || |||||||||| ||| | || | ||| || | || | ||||||| ||||| Sbjct 987384 ATGCCCTCCTTGTCC-TGAATCTTGGACTTGACATTGTCG--ATAGTGTCGGAAGACTCA 987328 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTTATCGATG 41872 ||||| | || || || || || |||| ||||| ||||| ||||||||| | || | Sbjct 987327 ACCTCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCATGATGGCGGT- 987269 Query 41873 GATCTCGCGCG 41883 ||||| |||| Sbjct 987268 GATCTGTCGCG 987258 Score = 118 bits (130), Expect = 1e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| || || | || || || || || ||||||||| ||||| |||||| Sbjct 988243 GCCACCGCGAAGTCGGAGAACGAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAGTCGCT 988184 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 | |||||| | || || | |||||| || ||||| || || |||||||| || | ||| Sbjct 988183 CAAGGTGCGACCATCTTCCAACTGCTTACCAGCGAAGATAAGACGCTGTTGATCAGGGGG 988124 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 || | |||||||||| || || ||||| || | | | |||||| || ||||| | Sbjct 988123 AATACCCTCCTTGTCCTGAATCTTGCTCTTCA-CGTTGTCGATAGTGTCACTGGACTCGA 988065 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| | || || || || || || || ||||| || ||||||||||| Sbjct 988064 CCTCAAGGGTGATGGTCTTTCCGGTGAGAGTCTTCACAAAAATCTGCAT 988016 Score = 102 bits (112), Expect = 8e-17 Identities = 155/218 (71%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | || ||||| || || |||||||||||||| ||||||| Sbjct 987786 CCACCACGGAGGCGGAGGACGAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCGGCA 987727 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || | || ||||| ||||| || || || ||||| ||||| ||||| | || Sbjct 987726 AGGGTTCGGCCATCTTCGAGTTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGG 987667 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||||||| ||| | |||| | ||| | | | || ||| |||||| || Sbjct 987666 ATGCCCTCCTTGTCC-TGAATCTTTGACTTAACATTGTCGATGGTATCGGACGACTCGAC 987608 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGA 41852 ||| | || || || || || || || ||||| |||| Sbjct 987607 CTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACGA 987570 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| || || || |||||||||||||| |||||||| Sbjct 988014 CCACCACGAAGACGGAGAACCAAGTGGAGAGTAGATTCCTTCTGAATGTTGTAGTCGGAA 987955 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || | || || || |||||||| ||||| || || |||||||| || | ||| Sbjct 987954 AGAGTTCGGCCATCTTCAAGTTGCTTGCCAGCGAAGATGAGTCGCTGTTGATCGGGAGGA 987895 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCA-ACGACGACACAGTGTCGCTCGACTCCAC 41814 | | |||||||||| ||| || ||||| | | | | || ||| ||||| || Sbjct 987894 ATACCCTCCTTGTCCTGGATCTTGCTCTTCACATTATCA-ATGGTATCGGATGACTCGAC 987836 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| || || || || || || || ||||| ||||| || ||||| Sbjct 987835 TTCCAGAGTAATGGTCTTTCCAGTGAGGGTCTTGACGAAGATTTGCAT 987788 >seq3046 Length=363889 Score = 129 bits (142), Expect = 5e-25 Identities = 140/184 (76%), Gaps = 4/184 (2%) Strand=Plus/Minus Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732 ||||||| ||||| ||||||||||| || || | || ||||||||||| || ||||| | Sbjct 198993 CCTTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCGAGCTGCTTACCAGCGAAGA 198934 Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGA 41790 |||| ||||||||||||| ||||| || |||||||||| ||| || ||| || | Sbjct 198933 TCAGTCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 198874 Query 41791 CGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850 || | ||||| ||||| ||||| | || || || || |||||||| ||||| || Sbjct 198873 CG--ATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCAC 198816 Query 41851 GAAA 41854 |||| Sbjct 198815 GAAA 198812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462283444808400