Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702635 .1_202016-08-10] 1,314 sequences; 48,396,317 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq382 134 1e-26 seq595 131 1e-25 seq466 109 5e-19 >seq382 Length=696405 Score = 134 bits (148), Expect = 1e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||||| || ||||| || || |||||||| ||||||| ||||| ||||||| Sbjct 112905 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGTCCATCCTCG 112846 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || ||||| ||||||| |||||||| || || || |||||||||||||| Sbjct 112845 AGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 112786 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| |||||| | ||| ||||| | ||| | ||| || Sbjct 112785 ATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTC 112726 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || || || || ||||||||||| Sbjct 112725 CCCGTGAGGGTCTTGACGAAAATCTGCAT 112697 >seq595 Length=961575 Score = 131 bits (144), Expect = 1e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || ||||||||||| ||||| | ||||| ||| || | ||| || ||| Sbjct 588625 GTTGACTCCTTCTGAATGTTGTAGTCGCTTAAGGTGCGACCATCTTCCAACTGCTTACCA 588566 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||| |||||||| ||||| || || || ||||||||||| ||| || || Sbjct 588565 GCGAAGATAAGACGCTGTTGATCAGGGGGAATACCCTCCTTGTCCTGAATCTTGCTCTTC 588506 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | |||| ||||| || ||||||||| | ||| | || || ||||| ||||| Sbjct 588505 ACGTTGTCGATAGTGTCACTGGACTCGACCTCAAGGGTGATGGTCTTTCCGGTGAGAGTC 588446 Query 118722 TTTACAAAAATCTGCAT 118738 || |||||||||||||| Sbjct 588445 TTCACAAAAATCTGCAT 588429 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || |||||||||||||| | |||||| ||||| ||||| || || Sbjct 587887 GTGGACTCCTTCTGAATGTTGTAATCAGAGAGAGTGCGGCCGTCCTCAAGCTGCTTGCCG 587828 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| | || | || ||||| ||||| || |||||||||||||| ||| || || Sbjct 587827 GCGAAAATCAAGCGTTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGAATCTTGGACTTG 587768 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | |||| ||||| | ||| ||||||| ||| | || |||||||||| || Sbjct 587767 ACATTGTCGATAGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCTTGCCGGTCAAGGTC 587708 Query 118722 TTTACAAAAATCTGCATG 118739 || || || ||||||||| Sbjct 587707 TTGACGAAGATCTGCATG 587690 Score = 102 bits (112), Expect = 7e-17 Identities = 92/116 (79%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||||| ||||| || || ||||||||||| ||| | ||| || ||| || Sbjct 588409 ACCAAGTGGAGAGTAGATTCCTTCTGAATGTTGTAGTCGGAAAGAGTTCGGCCATCTTCA 588350 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || || || |||||| ||||||| ||||| ||||||||||| || ||||||||||| Sbjct 588349 AGTTGCTTGCCAGCGAAGATGAGTCGCTGTTGATCGGGAGGAATACCCTCCTTGTC 588294 Score = 100 bits (110), Expect = 2e-16 Identities = 133/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 ||||| || || ||||||||||| ||| | || || ||| ||||| || |||||| Sbjct 588169 GTAGATTCCTTCTGAATGTTGTAGTCGGCAAGGGTTCGGCCATCTTCGAGTTGCTTTCCA 588110 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || |||| || |||||||| || ||||| |||||||||||||| ||| ||| ||| Sbjct 588109 GCAAAGATCAGGCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGAATCTTTGACTTA 588050 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | |||| ||| || | ||||||||| | || | || ||||| || || || Sbjct 588049 ACATTGTCGATGGTATCGGACGACTCGACCTCAAGAGTGATGGTCTTGCCAGTGAGGGTC 587990 Query 118722 TTTAC 118726 || || Sbjct 587989 TTGAC 587985 >seq466 Length=609498 Score = 109 bits (120), Expect = 5e-19 Identities = 132/180 (73%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610 || || |||||||| ||| | ||| || |||||||||||| || |||||| |||| Sbjct 468988 TTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCGAGCTGCTTACCAGCGAAGATC 468929 Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670 || ||||| || || || || |||||||||||||| || || || || | ||| Sbjct 468928 AGTCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 468869 Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 118730 | |||||||| | ||||||||||| ||| | || ||||| ||||| || || || ||| Sbjct 468868 ATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAA 468809 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433823452477288