Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702635
.1_202016-08-10] 1,314 sequences; 48,396,317 total letters
Query= NC_002169.1
Length=135611
Score E
Sequences producing significant alignments: (Bits) Value
seq382 134 1e-26
seq595 131 1e-25
seq466 109 5e-19
>seq382
Length=696405
Score = 134 bits (148), Expect = 1e-26
Identities = 155/209 (74%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
|||| ||||| || ||||| || || |||||||| ||||||| ||||| |||||||
Sbjct 112905 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGTCCATCCTCG 112846
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649
||||| || ||||| ||||||| |||||||| || || || ||||||||||||||
Sbjct 112845 AGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 112786
Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709
|| || || || | |||| |||||| | ||| ||||| | ||| | ||| ||
Sbjct 112785 ATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTC 112726
Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|| || || || || || |||||||||||
Sbjct 112725 CCCGTGAGGGTCTTGACGAAAATCTGCAT 112697
>seq595
Length=961575
Score = 131 bits (144), Expect = 1e-25
Identities = 147/197 (75%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601
|| ||||| || ||||||||||| ||||| | ||||| ||| || | ||| || |||
Sbjct 588625 GTTGACTCCTTCTGAATGTTGTAGTCGCTTAAGGTGCGACCATCTTCCAACTGCTTACCA 588566
Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661
||| |||| |||||||| ||||| || || || ||||||||||| ||| || ||
Sbjct 588565 GCGAAGATAAGACGCTGTTGATCAGGGGGAATACCCTCCTTGTCCTGAATCTTGCTCTTC 588506
Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721
|| | |||| ||||| || ||||||||| | ||| | || || ||||| |||||
Sbjct 588505 ACGTTGTCGATAGTGTCACTGGACTCGACCTCAAGGGTGATGGTCTTTCCGGTGAGAGTC 588446
Query 118722 TTTACAAAAATCTGCAT 118738
|| ||||||||||||||
Sbjct 588445 TTCACAAAAATCTGCAT 588429
Score = 105 bits (116), Expect = 6e-18
Identities = 142/198 (72%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601
|| ||||| || |||||||||||||| | |||||| ||||| ||||| || ||
Sbjct 587887 GTGGACTCCTTCTGAATGTTGTAATCAGAGAGAGTGCGGCCGTCCTCAAGCTGCTTGCCG 587828
Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661
||| | || | || ||||| ||||| || |||||||||||||| ||| || ||
Sbjct 587827 GCGAAAATCAAGCGTTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGAATCTTGGACTTG 587768
Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721
|| | |||| ||||| | ||| ||||||| ||| | || |||||||||| ||
Sbjct 587767 ACATTGTCGATAGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCTTGCCGGTCAAGGTC 587708
Query 118722 TTTACAAAAATCTGCATG 118739
|| || || |||||||||
Sbjct 587707 TTGACGAAGATCTGCATG 587690
Score = 102 bits (112), Expect = 7e-17
Identities = 92/116 (79%), Gaps = 0/116 (0%)
Strand=Plus/Minus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
|||||||||| ||||| || || ||||||||||| ||| | ||| || ||| ||
Sbjct 588409 ACCAAGTGGAGAGTAGATTCCTTCTGAATGTTGTAGTCGGAAAGAGTTCGGCCATCTTCA 588350
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645
|| || || |||||| ||||||| ||||| ||||||||||| || |||||||||||
Sbjct 588349 AGTTGCTTGCCAGCGAAGATGAGTCGCTGTTGATCGGGAGGAATACCCTCCTTGTC 588294
Score = 100 bits (110), Expect = 2e-16
Identities = 133/185 (72%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601
||||| || || ||||||||||| ||| | || || ||| ||||| || ||||||
Sbjct 588169 GTAGATTCCTTCTGAATGTTGTAGTCGGCAAGGGTTCGGCCATCTTCGAGTTGCTTTCCA 588110
Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661
|| |||| || |||||||| || ||||| |||||||||||||| ||| ||| |||
Sbjct 588109 GCAAAGATCAGGCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGAATCTTTGACTTA 588050
Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721
|| | |||| ||| || | ||||||||| | || | || ||||| || || ||
Sbjct 588049 ACATTGTCGATGGTATCGGACGACTCGACCTCAAGAGTGATGGTCTTGCCAGTGAGGGTC 587990
Query 118722 TTTAC 118726
|| ||
Sbjct 587989 TTGAC 587985
>seq466
Length=609498
Score = 109 bits (120), Expect = 5e-19
Identities = 132/180 (73%), Gaps = 0/180 (0%)
Strand=Plus/Minus
Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610
|| || |||||||| ||| | ||| || |||||||||||| || |||||| ||||
Sbjct 468988 TTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCGAGCTGCTTACCAGCGAAGATC 468929
Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670
|| ||||| || || || || |||||||||||||| || || || || | |||
Sbjct 468928 AGTCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 468869
Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 118730
| |||||||| | ||||||||||| ||| | || ||||| ||||| || || || |||
Sbjct 468868 ATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAA 468809
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433823452477288
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |