Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702635 .1_202016-08-10] 1,314 sequences; 48,396,317 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq454 168 8e-37 >seq454 Length=245286 Score = 168 bits (186), Expect = 8e-37 Identities = 582/899 (65%), Gaps = 18/899 (2%) Strand=Plus/Minus Query 63023 GATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAA 63082 ||| || || | || | ||| || ||||| ||| || |||||||| || || ||||| Sbjct 11256 GATGGTACCGAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAA 11197 Query 63083 TGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTC-GAGCCTTTA 63141 ||| | || || ||| |||| | || | ||| || | ||| | | || ||||||| | Sbjct 11196 TGGGTTTCCGGTCTCAGTCTGGGCCTCAAGAATGGCGTACCAAA-GTTTCTGAGCCTTGA 11138 Query 63142 TTATAGATTTGTATCTCCTTTCTCTT----TCGTA--TAGAGTATACAATCGTTCGAACT 63195 | || ||| | |||| | || ||||| | ||| | | | ||||||| Sbjct 11137 T---AGTCTTGCGAC-CCTTGCCCTCCTTCTCGTACTTTTCGTACAGAGCC--TCGAACT 11084 Query 63196 CGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGACCACTCTC 63255 | ||||| | | | | | | ||| || || | || ||||||| || ||| || | Sbjct 11083 CCTCTCCGTAGCAGTCGGCGAGGCCAGGGCACTCGTTGGGGCACATCAGCGTCCAGTCGC 11024 Query 63256 CGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTC 63315 ||| | | || || ||||| || |||||||| |||||||| || | || || || | Sbjct 11023 CGTTCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCAAAGGGCGAGGAAAAGGTCAC 10964 Query 63316 TTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAG 63375 | | ||||| || || ||||| ||||| |||||| | | | ||||| Sbjct 10963 GGGCACGGACCTCCTCTTTACCGTGGTTCTTACGGAGATCAAGGAACTCGAAGACATCAG 10904 Query 63376 AATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTA 63435 | ||||| || || | ||| ||||| | | | || || || ||||| || ||||| || | Sbjct 10903 AGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCTTGTTGCCACCCTGGTCGA 10844 Query 63436 TGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCAT 63495 || | ||| ||||| || | || | | ||| |||| || |||||| ||| |||| | Sbjct 10843 CATAGCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAACACCGTTCGATGTACCGT 10784 Query 63496 TGGTACCGGAGATATAGCCTCCACTGGCACGAATAT--TACTAATTGATAGACCTATTCC 63553 ||||||||| ||| ||| ||| | ||||| ||| | | || | |||| || || Sbjct 10783 TGGTACCGGCGATGTAGGAGCCAGTAGCACGGATACGGTGCACGTTCA--GACCAATACC 10726 Query 63554 CCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCT 63613 || ||||| || ||||| | || || || | || || ||||| || || || || Sbjct 10725 ACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGTAGATTCCCTCAATACT 10666 Query 63614 ATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATT 63673 || || |||| | || | || || |||| |||| | ||| || || || || Sbjct 10665 GTCGTCCTTCATATCAACCAAGAAGCAAGATGACAATTGGGGCTGAGGGGTGCCGGCGTT 10606 Query 63674 AAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAAT 63733 || | || |||||||| || || || |||| || | || ||||| ||||| | Sbjct 10605 GAAGAGCGTGGGAGAAGCATGTGTGAAGAATTTGCTGGACATCAGGTTGTATGTCTCCAA 10546 Query 63734 AGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGG 63793 || || ||||| ||| || || | |||||||| | |||||||||||| Sbjct 10545 GACTCGCTCGATATCATCACCCCAAATACCAACAGACACACGCATGATCATGTGCTGAGG 10486 Query 63794 TCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACC 63853 | || ||||| || || || || | | ||| ||| |||||||| || || || Sbjct 10485 GCGCTCGACAATCTTACCGTCAATCTTGAGGAGGTATGATCGCTCCAAAGTCTTGAAGCC 10426 Query 63854 AAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGCTTATCCTTAT 63912 ||| || | |||| || || || || || | ||| | || | | || ||||||| Sbjct 10425 AAAGTATTGGTATTGGAAATCGCGGTCATAGACAATGGCAGAGTCCAACTCCTCCTTAT 10367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629807255245920