Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702635
.1_202016-08-10] 1,314 sequences; 48,396,317 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq454 185 1e-41
>seq454
Length=245286
Score = 185 bits (204), Expect = 1e-41
Identities = 574/881 (65%), Gaps = 12/881 (1%)
Strand=Plus/Minus
Query 65816 GATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAA 65875
|||||| || | || | ||| || ||||| ||| || |||||||| || || |||||
Sbjct 11256 GATGGTACCGAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAA 11197
Query 65876 TGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTC-GAGCCTTTA 65934
||| | || || ||| |||| | || | ||| || | ||| | | || ||||||| |
Sbjct 11196 TGGGTTTCCGGTCTCAGTCTGGGCCTCAAGAATGGCGTACCAAA-GTTTCTGAGCCTTGA 11138
Query 65935 TTATAGATTTGTATCTCTTTTCT--CTT-TCGTATAGTGTATACAATCGTTCGAACTCGT 65991
| || ||| | ||| | ||| ||||| | |||| |||||||| |
Sbjct 11137 T---AGTCTTGCGACCCTTGCCCTCCTTCTCGTACTTTTCGTACAGAGCCTCGAACTCCT 11081
Query 65992 CTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGT 66051
|||| | | | | | ||||| || || | || ||||||| || ||| || ||||
Sbjct 11080 CTCCGTAGCAGTCGGCGAGGCCAGGGCACTCGTTGGGGCACATCAGCGTCCAGTCGCCGT 11021
Query 66052 CATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGG 66111
| | || || ||||| || |||||||| |||||||| || | || | || | ||
Sbjct 11020 TCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCAAAGGGCGAGGAAAAGGTCACGGG 10961
Query 66112 TTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAAT 66171
| ||||| || || ||||| ||||| |||||| | | | |||| | |
Sbjct 10960 CACGGACCTCCTCTTTACCGTGGTTCTTACGGAGATCAAGGAACTCGAAGACATCAGAGT 10901
Query 66172 GCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGT 66231
|||| || || | ||| ||||| | | | || || || ||||| || ||||| || | |
Sbjct 10900 GCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCTTGTTGCCACCCTGGTCGACAT 10841
Query 66232 ATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGG 66291
| | ||| ||||| || | || | | ||| |||| || ||| || |||||||| ||||
Sbjct 10840 AGCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAACACCGTTCGATGTACCGTTGG 10781
Query 66292 TCCCGGAGATATAGCTTCCACTTGCACGAATAT--TACTAATTGATAGACCTATTCCCCC 66349
| |||| ||| ||| ||| | ||||| ||| | | || | |||| || || ||
Sbjct 10780 TACCGGCGATGTAGGAGCCAGTAGCACGGATACGGTGCACGTTCA--GACCAATACCACC 10723
Query 66350 TGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATC 66409
||||| || ||||| | || || || | ||||| ||||| ||||| ||||| ||
Sbjct 10722 AGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGTAGATTCCCTCAATACTGTC 10663
Query 66410 ATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAA 66469
||| |||| | || | || || |||| |||| | || || || || || ||
Sbjct 10662 GTCCTTCATATCAACCAAGAAGCAAGATGACAATTGGGGCTGAGGGGTGCCGGCGTTGAA 10603
Query 66470 TAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGC 66529
| || |||||||| || || || |||| || | || ||||| ||||| | |
Sbjct 10602 GAGCGTGGGAGAAGCATGTGTGAAGAATTTGCTGGACATCAGGTTGTATGTCTCCAAGAC 10543
Query 66530 TGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCT 66589
| || ||||| ||| || || | |||||||| | |||||||||||| |
Sbjct 10542 TCGCTCGATATCATCACCCCAAATACCAACAGACACACGCATGATCATGTGCTGAGGGCG 10483
Query 66590 TTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAA 66649
|| || ||||| || || || | | ||| ||| |||||||| || || |||||
Sbjct 10482 CTCGACAATCTTACCGTCAATCTTGAGGAGGTATGATCGCTCCAAAGTCTTGAAGCCAAA 10423
Query 66650 ATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGT 66690
|| | |||| || || || || || | ||| | ||||
Sbjct 10422 GTATTGGTATTGGAAATCGCGGTCATAGACAATGGCAGAGT 10382
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 658161989511760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |