Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702635
.1_202016-08-10] 1,314 sequences; 48,396,317 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq454 206 4e-48
seq526 114 2e-20
>seq454
Length=245286
Score = 206 bits (228), Expect = 4e-48
Identities = 601/914 (66%), Gaps = 20/914 (2%)
Strand=Plus/Minus
Query 79666 ATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTT 79725
|| ||||||||||| ||||| | ||||| || | || | ||| || |||||
Sbjct 11285 ATAATTTCAGTGCACAGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTTGCTCTTG 11226
Query 79726 TTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATA 79785
||| || |||||||| || || ||||| || | || || ||| |||| | || | |
Sbjct 11225 CGGTTGCAGGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCCTCAAGA 11166
Query 79786 ATCGCTTTCCAGACGACTC-GAGCCTTTATTATAGACTTGTATCTCTTTTCT--CTT-TC 79841
|| || | ||| | | || ||||||| || || |||| | ||| | ||| ||
Sbjct 11165 ATGGCGTACCAAA-GTTTCTGAGCCTTGAT---AGTCTTGCGACCCTTGCCCTCCTTCTC 11110
Query 79842 GTATTGT--GTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACAT 79899
||| | | ||| | | | |||||||| ||||| | ||| | | ||||| ||
Sbjct 11109 GTACTTTTCGTACAGAGCC--TCGAACTCCTCTCCGTAGCAGTCGGCGAGGCCAGGGCAC 11052
Query 79900 TCGTCAGGACACATCAACGACCACTCTCCATCATCCTTT--ACTCGTTTCATAAAGAGAT 79957
|||| || ||||||| || ||| || || | || ||| || || ||||| || ||||
Sbjct 11051 TCGTTGGGGCACATCAGCGTCCAGTCGCCGT--TCTTTTCAACACGCTTCATGAAAAGAT 10994
Query 79958 CAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCT 80017
|||| |||||||| || | || || || | || | |||||| || || ||||
Sbjct 10993 CAGGGATCCAAAGGGCGAGGAAAAGGTCACGGGCACGGACCTCCTCTTTACCGTGGTTCT 10934
Query 80018 TTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAA 80077
| ||||| |||||| | | | |||||| ||||| || || | ||| ||||| | |
Sbjct 10933 TACGGAGATCAAGGAACTCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAG 10874
Query 80078 CTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCA 80137
| || ||||| ||||| || ||||| || | || | ||| ||||| || | || | |
Sbjct 10873 CACCGGGTCGCTTGTTGCCACCCTGGTCGACATAGCGAGCAGTGTTGTTGAAGACACGAA 10814
Query 80138 ACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCAC 80197
||| |||| || ||| || |||||||| ||||| |||| ||| ||| ||| | ||||
Sbjct 10813 GCATAGGAACAACACCGTTCGATGTACCGTTGGTACCGGCGATGTAGGAGCCAGTAGCAC 10754
Query 80198 GAATAT--TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCG 80255
| ||| | | || | |||| || || || ||||| || ||||| | || ||
Sbjct 10753 GGATACGGTGCACGTTCA--GACCAATACCACCAGCCATCTTGGAGATCATGGCACAGGT 10696
Query 80256 TTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCT 80315
|| | ||||| ||||| ||||| || || || || |||| | || | || ||
Sbjct 10695 CTTGAGAGTATCGTAGATTCCCTCAATACTGTCGTCCTTCATATCAACCAAGAAGCAAGA 10636
Query 80316 AGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCA 80375
|||| |||| | || || || || || || | || |||||||| || || || |
Sbjct 10635 TGACAATTGGGGCTGAGGGGTGCCGGCGTTGAAGAGCGTGGGAGAAGCATGTGTGAAGAA 10576
Query 80376 TTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCC 80435
||| |||| || ||||| ||||| | || || ||||| ||| ||
Sbjct 10575 TTTGCTGGACATCAGGTTGTATGTCTCCAAGACTCGCTCGATATCATCACCCCAAATACC 10516
Query 80436 TACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAA 80495
|| | |||||||| | |||||||||||| | || || ||||| | || || |
Sbjct 10515 AACAGACACACGCATGATCATGTGCTGAGGGCGCTCGACAATCTTACCGTCAATCTTGAG 10456
Query 80496 CAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTA 80555
| ||| ||| |||||||| || || ||||| || | |||| || || || || ||
Sbjct 10455 GAGGTATGATCGCTCCAAAGTCTTGAAGCCAAAGTATTGGTATTGGAAATCGCGGTCATA 10396
Query 80556 AATAATAACCGAGT 80569
| ||| | ||||
Sbjct 10395 GACAATGGCAGAGT 10382
>seq526
Length=378168
Score = 114 bits (126), Expect = 2e-20
Identities = 354/544 (65%), Gaps = 8/544 (1%)
Strand=Plus/Plus
Query 49974 GTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 50033
||| |||||||| || | | || || |||||||| || || || |||||||| || ||
Sbjct 284961 GTGAAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCGGGCATGAGACC 285020
Query 50034 ACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGC 50093
|||||| || ||||| || || || || || | ||| |||||||| || || || ||
Sbjct 285021 ACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGCACCACTGAAGAAGATACCCTCAACAGC 285080
Query 50094 GGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGC---TGTCATGTATCCA-CTTTTGAG 50149
|| || ||||| || | || || | || | | || || ||||| | || |
Sbjct 285081 AGCGAAAGCAACGAGACGCTGGGCAAATGAGGAGTCCTTATCCTGGATCCATCGGATG-G 285139
Query 50150 CCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttt 50209
|||| |||||||||||| | || || || || || ||||| |||||||| ||| ||
Sbjct 285140 CCCAGTCGGCCTTCTTTCGGATGCAGGGGATGGTCTCAATGGCGTTAAAGAGGTAGGTTC 285199
Query 50210 tttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGT 50269
| || || | || || || || | || || | || || || ||||
Sbjct 285200 GCTGGGCGGGCTCCTTGATGTAGGTGTCAATGAGCAGGGAGTAGGTCTCGGAGTGGATGT 285259
Query 50270 TTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTAC 50329
| || || ||||| || |||||||| || | |||||||| ||||| || || ||
Sbjct 285260 TCTCCATCATGATCTGGAAGCCGTAGAAGCAACGAGCCTCGGGGATCTGGACCTCGCCAC 285319
Query 50330 AAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATA 50389
||||| || | | || || || || || || ||| ||| || ||||| || | |
Sbjct 285320 TGAATCGCTCGACGAGGTTCTCGTTGACAATACCATCAGAGGCAGCGAAAAAAGCAAGGA 285379
Query 50390 CATGTTTTATAAAATGTTTTTCGTTGGGTGTTA---GTTTATTCCAATCATTGATATCTT 50446
|| | || | || | || || | | || ||||| |||| || ||| |
Sbjct 285380 TGTGAGAGACGAAGAACTGCTCATCGGCAGTCAGGCGGTTGTTCCAGTCATGGAGATCCT 285439
Query 50447 TAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCC 50506
| || | ||| | || || | ||||| || || ||||| ||||| || ||||| | ||
Sbjct 285440 TGGAAAGATCAATCTCCTCAGCAGTCCAGAAGGAAGCCTCAGCCTTCTTGTACATTTGCC 285499
Query 50507 AGAT 50510
| ||
Sbjct 285500 AAAT 285503
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718257002434960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |