Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702635
.1_202016-08-10] 1,314 sequences; 48,396,317 total letters
Query= NC_005839.2
Length=131680
Score E
Sequences producing significant alignments: (Bits) Value
seq595 100 2e-16
>seq595
Length=961575
Score = 100 bits (110), Expect = 2e-16
Identities = 146/204 (72%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTCCAGCTG 48582
||||| ||| |||||| |||||||||||||||| | | || || ||||||| |||||
Sbjct 587893 TGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGAGAGAGTG-CGGCCGTCCTCAAGCTG 587835
Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642
||| ||| || |||| || || ||||| || || | | ||||||||| ||| ||
Sbjct 587834 CTTGCCGGCGAAAATCAAGCGTTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGAATCTT 587775
Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702
||||| | | || || |||| |||||| ||||| || ||||| || |||||
Sbjct 587774 GGACTTGACATTGTCGATAGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCTTGCCGGT 587715
Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726
| || || || || ||||||||
Sbjct 587714 CAAGGTCTTGACGAAGATCTGCAT 587691
Score = 89.7 bits (98), Expect = 4e-13
Identities = 146/206 (71%), Gaps = 6/206 (3%)
Strand=Plus/Minus
Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTG 48582
||||| || |||||| ||||||||||| || || | || || | || |||| |||
Sbjct 588631 TGAAGAGTTGACTCCTTCTGAATGTTGTAGTC-GCTTAAGGTGCGACCATCTTCCAACTG 588573
Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642
|||||| || | || | |||||| ||||| || | || ||||||||| ||| ||
Sbjct 588572 CTTACCAGCGAAGATAAGACGCTGTTGATCAGGGGGAATACCCTCCTTGTCCTGAATCTT 588513
Query 48643 CTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCG 48700
||| | | | || || || || | ||||| ||| | || ||||| || |||
Sbjct 588512 GCTCTTCACGTTGTCGATA--GTGTCACTGGACTCGACCTCAAGGGTGATGGTCTTTCCG 588455
Query 48701 GTGAGAGTTTTCACAAAAATCTGCAT 48726
|||||||| |||||||||||||||||
Sbjct 588454 GTGAGAGTCTTCACAAAAATCTGCAT 588429
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 421244453925314
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |