Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702635
.1_202016-08-10] 1,314 sequences; 48,396,317 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq454 179 5e-40
>seq454
Length=245286
Score = 179 bits (198), Expect = 5e-40
Identities = 573/882 (65%), Gaps = 14/882 (2%)
Strand=Plus/Minus
Query 62972 GATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAA 63031
||| || || | || | ||| || ||||| ||| || |||||||| || || |||||
Sbjct 11256 GATGGTACCGAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAA 11197
Query 63032 TGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTC-GAGCCTTTA 63090
||| | || || ||| |||| | || | ||| || | ||| | | || ||||||| |
Sbjct 11196 TGGGTTTCCGGTCTCAGTCTGGGCCTCAAGAATGGCGTACCAAA-GTTTCTGAGCCTTGA 11138
Query 63091 TTATAGATTTGTATCTCCTTTCTCTT----TCGTATAGTGTATACAATCGTTCGAACTCG 63146
| || ||| | |||| | || ||||| | |||| ||||||||
Sbjct 11137 T---AGTCTTGCGAC-CCTTGCCCTCCTTCTCGTACTTTTCGTACAGAGCCTCGAACTCC 11082
Query 63147 TCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCG 63206
||||| | | | | | ||||| || || | || ||||||| || ||| || |||
Sbjct 11081 TCTCCGTAGCAGTCGGCGAGGCCAGGGCACTCGTTGGGGCACATCAGCGTCCAGTCGCCG 11022
Query 63207 TCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTG 63266
| | | || || ||||| || |||||||| |||||||| || | || || || | |
Sbjct 11021 TTCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCAAAGGGCGAGGAAAAGGTCACGG 10962
Query 63267 GTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAA 63326
| | ||||| || || ||||| ||||| |||||| | | | ||||||
Sbjct 10961 GCACGGACCTCCTCTTTACCGTGGTTCTTACGGAGATCAAGGAACTCGAAGACATCAGAG 10902
Query 63327 TGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATG 63386
||||| || || | ||| ||||| | | | || || || ||||| || ||||| || |
Sbjct 10901 TGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCTTGTTGCCACCCTGGTCGACA 10842
Query 63387 TATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTG 63446
|| | ||| ||||| || | || | | ||| |||| || |||||| ||| |||| |||
Sbjct 10841 TAGCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAACACCGTTCGATGTACCGTTG 10782
Query 63447 GTACCGGAGATATAGCTTCCACTGGCACGAATAT--TACTAATTGATAGACCTATTCCCC 63504
||||||| ||| ||| ||| | ||||| ||| | | || | |||| || || |
Sbjct 10781 GTACCGGCGATGTAGGAGCCAGTAGCACGGATACGGTGCACGTTCA--GACCAATACCAC 10724
Query 63505 CTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTAT 63564
| ||||| || ||||| | || || || | || || ||||| ||||| || || |
Sbjct 10723 CAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGTAGATTCCCTCAATACTGT 10664
Query 63565 CATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAA 63624
| || |||| | || | || || |||| |||| | || || || || || |
Sbjct 10663 CGTCCTTCATATCAACCAAGAAGCAAGATGACAATTGGGGCTGAGGGGTGCCGGCGTTGA 10604
Query 63625 ATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAG 63684
| | || |||||||| || || || |||| || | || ||||| ||||| |
Sbjct 10603 AGAGCGTGGGAGAAGCATGTGTGAAGAATTTGCTGGACATCAGGTTGTATGTCTCCAAGA 10544
Query 63685 CTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTC 63744
|| || ||||| ||| || || | |||||||| | |||||||||||| |
Sbjct 10543 CTCGCTCGATATCATCACCCCAAATACCAACAGACACACGCATGATCATGTGCTGAGGGC 10484
Query 63745 TTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAA 63804
|| || ||||| || || || | | ||| ||| |||||||| || || ||||
Sbjct 10483 GCTCGACAATCTTACCGTCAATCTTGAGGAGGTATGATCGCTCCAAAGTCTTGAAGCCAA 10424
Query 63805 AATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGT 63846
| || | |||| || || || || || | ||| | ||||
Sbjct 10423 AGTATTGGTATTGGAAATCGCGGTCATAGACAATGGCAGAGT 10382
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622936968092240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |