Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702635
.1_202016-08-10] 1,314 sequences; 48,396,317 total letters
Query= NC_010276.1
Length=156179
Score E
Sequences producing significant alignments: (Bits) Value
seq595 113 5e-20
>seq595
Length=961575
Score = 113 bits (124), Expect = 5e-20
Identities = 152/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291
|| || || |||| || || || || |||||||||||||| | || ||||| ||||
Sbjct 587902 AGAACAAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGAGAGAGTGCGGCCGTCC 587843
Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351
||||||||||||||||| |||| | || ||||||||||| || || || || || ||
Sbjct 587842 TCAAGCTGCTTGCCGGCGAAAATCAAGCGTTGCTGGTCGGGGGGGATGCCCTCCTTGTCC 587783
Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411
|| || || ||| ||| || | || || | || || || | || | ||||
Sbjct 587782 TGAATCTTGGACTTGACATTGTCGATAGTGTCGGAAGACTCAACCTCGAGGGTGATGGTC 587723
Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
||||||||||| || || ||||| || |||||
Sbjct 587722 TTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 587691
Score = 98.7 bits (108), Expect = 1e-15
Identities = 143/202 (71%), Gaps = 0/202 (0%)
Strand=Plus/Minus
Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291
|| || ||||||| || ||||| || ||||||||||| || || | ||| || | |||
Sbjct 588184 AGGACGAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCGGCAAGGGTTCGGCCATCT 588125
Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351
|| || ||||| || ||| | || || ||||||||||| ||||| || || || || ||
Sbjct 588124 TCGAGTTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCC 588065
Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411
|| || ||| ||| ||| || | ||||| | || || || | ||| | ||||
Sbjct 588064 TGAATCTTTGACTTAACATTGTCGATGGTATCGGACGACTCGACCTCAAGAGTGATGGTC 588005
Query 64412 TTGCCGGTCAAAGTTTTTACGA 64433
||||| || | || || ||||
Sbjct 588004 TTGCCAGTGAGGGTCTTGACGA 587983
Score = 98.7 bits (108), Expect = 1e-15
Identities = 140/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306
|| ||||| || ||||||||||| || | | || || | |||||||| ||||||||
Sbjct 588397 GTAGATTCCTTCTGAATGTTGTAGTCGGAAAGAGTTCGGCCATCTTCAAGTTGCTTGCCA 588338
Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366
|| | ||||| ||||| || ||||||||||| || || || || || || || |||
Sbjct 588337 GCGAAGATGAGTCGCTGTTGATCGGGAGGAATACCCTCCTTGTCCTGGATCTTGCTCTTC 588278
Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426
||| || | ||||| | || ||||| | ||| | |||||| || || | ||
Sbjct 588277 ACATTATCAATGGTATCGGATGACTCGACTTCCAGAGTAATGGTCTTTCCAGTGAGGGTC 588218
Query 64427 TTTACGAAAATTTGCAT 64443
|| ||||| ||||||||
Sbjct 588217 TTGACGAAGATTTGCAT 588201
Score = 86.0 bits (94), Expect = 6e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276
|| ||||| | || || || || |||| || || || || ||||||||||| ||
Sbjct 588655 CCACCGCGAAGTCGGAGAACGAGGTGAAGAGTTGACTCCTTCTGAATGTTGTAGTCGCTT 588596
Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336
| |||||| | ||||| | |||||| || || | || || ||||| || || || |||
Sbjct 588595 AAGGTGCGACCATCTTCCAACTGCTTACCAGCGAAGATAAGACGCTGTTGATCAGGGGGA 588536
Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396
|| || || || || || || || ||| || || | || |||| || || ||
Sbjct 588535 ATACCCTCCTTGTCCTGAATCTTGCTCTTCACGTTGTCGATAGTGTCACTGGACTCGACC 588476
Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|| | || | |||||| ||||| | ||| || || ||||| |||||
Sbjct 588475 TCAAGGGTGATGGTCTTTCCGGTGAGAGTCTTCACAAAAATCTGCAT 588429
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 499636593334160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |