Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702635
.1_202016-08-10] 1,314 sequences; 48,396,317 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq526 192 6e-44
seq382 122 9e-23
seq466 114 1e-20
seq595 113 5e-20
>seq526
Length=378168
Score = 192 bits (212), Expect = 6e-44
Identities = 377/553 (68%), Gaps = 11/553 (2%)
Strand=Plus/Plus
Query 132894 GCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAA 132953
||| |||||||| || | ||||| || | || ||||| |||||| ||| ||||
Sbjct 284946 GCAGGCAAAGTCAGTGTGAAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAG 285005
Query 132954 GCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAA 133013
||||||||||| || || || |||||||| || || | |||||| || |||||
Sbjct 285006 ACCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGCACCACTGAAGAA 285065
Query 133014 GACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTC--TTTGCTG 133071
|| ||||| || || |||||||| || || |||| | | || | || || | | |||
Sbjct 285066 GATACCCTCAACAGCAGCGAAAGCAACGAGACGCTGGGCAAATGAGGAGTCCTTATCCTG 285125
Query 133072 GCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCG 133131
|||||| || | ||||| |||||||| | | || ||| || || || || ||||||
Sbjct 285126 --GATCCATCGGATGGCCCAGTCGGCCTTCTTTCGGATGCAGGGGATGGTCTCAATGGCG 285183
Query 133132 TTCAACAAACGGAGTTTCTCTTCCGAGGAAC--GCACGTAGGTGTCGATGAGGGTCGAAT 133189
|| | | | | || ||| || || | | ||||||||| ||||| || |
Sbjct 285184 TT--AAAGAGGTAGGTTCGCTGGGCGGGCTCCTTGATGTAGGTGTCAATGAGCAGGGAGT 285241
Query 133190 ACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGA 133249
| | || ||||| | ||||||||| ||| || |||||||| ||||| || ||||||
Sbjct 285242 AGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAACGAGCCTCGG 285301
Query 133250 CCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGG 133309
| ||| || || | ||| |||||||| || || |||||||| || || || ||
Sbjct 285302 GGATCTGGACCTCGCCACTGAATCGCTCGACGAGGTTCTCGTTGACAATACCATCAGAGG 285361
Query 133310 CGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCG---CT 133366
| |||||||| || || | ||| || ||| |||| | | | ||| ||| |
Sbjct 285362 CAGCGAAAAAAGCAAGGATGTGAGAGACGAAGAACTGCTCATCGGCAGTCAGGCGGTTGT 285421
Query 133367 CCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGG 133426
|||||| | |||||||| || || | |||||| | ||||| || || ||||| |
Sbjct 285422 TCCAGTCATGGAGATCCTTGGAAAGATCAATCTCCTCAGCAGTCCAGAAGGAAGCCTCAG 285481
Query 133427 CTTTTTTGTACAT 133439
| || ||||||||
Sbjct 285482 CCTTCTTGTACAT 285494
>seq382
Length=696405
Score = 122 bits (134), Expect = 9e-23
Identities = 160/219 (73%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300
|| ||||| || ||||| || || |||||||| || || |||||| | || || ||| |
Sbjct 112694 AAGATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 112753
Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359
|||||| | | | |||| | || || |||| ||||| ||||| || ||| | ||
Sbjct 112754 TCCGACACCATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGA 112812
Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419
||| ||||| ||||| | || ||||| ||||| || || | |||||||| | ||||||
Sbjct 112813 CCAGCAGCGACTCATCTTTGCTGGCAAGCAGCTCGAGGATGGACGCACCCTGAGCGACTA 112872
Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458
||||||||| ||||| | || || || |||| || ||
Sbjct 112873 CAACATCCAGAAGGAGTCCACCCTCCACCTGGTCCTCCG 112911
>seq466
Length=609498
Score = 114 bits (126), Expect = 1e-20
Identities = 134/181 (74%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312
||||| || || || |||||||| ||||||||| |||| |||||| || | |||| | |
Sbjct 468810 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATC 468869
Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372
| | | || || |||| ||||| ||||| |||||| | ||||||||||| ||
Sbjct 468870 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAACAGCGACTG 468929
Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432
|| | ||| || || ||||| || || | || || ||| ||||||||||||||| |||
Sbjct 468930 ATCTTCGCTGGTAAGCAGCTCGAGGATGGCCGAACTCTCTCCGACTACAACATCCAGAAG 468989
Query 38433 G 38433
|
Sbjct 468990 G 468990
>seq595
Length=961575
Score = 113 bits (124), Expect = 5e-20
Identities = 158/218 (72%), Gaps = 4/218 (2%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
|||||||| ||||| || || ||||| || || ||||| || | || |||||| | ||
Sbjct 588201 ATGCAAATCTTCGTCAAGACCCTCACTGGAAAGACCATTACTCTGGAAGTCGAGTCATCC 588260
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361
|| | | | | || | | |||| || |||| ||||| ||||| ||||| |||| |
Sbjct 588261 GATACCATTGATAATG--TGAAGAGCAAGATCCAGGACAAGGAGGGTATTCCTCCCGATC 588318
Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421
||||||| ||||| | ||| ||||| || || || || | || || || ||||||||
Sbjct 588319 AACAGCGACTCATCTTCGCTGGCAAGCAACTTGAAGATGGCCGAACTCTTTCCGACTACA 588378
Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459
|||| || |||||| | || || || ||||| || |||
Sbjct 588379 ACATTCAGAAGGAATCTACTCTCCACTTGGTTCTCCGT 588416
Score = 104 bits (114), Expect = 2e-17
Identities = 141/193 (73%), Gaps = 4/193 (2%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || || || || || ||||| || || ||||||||| | || |||||| |||
Sbjct 588429 ATGCAGATTTTTGTGAAGACTCTCACCGGAAAGACCATCACCCTTGAGGTCGAGTCCAGT 588488
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361
|||| | | |||| | |||| || || | ||||| ||||| |||||| | || |
Sbjct 588489 GACACTATCGACAACG--TGAAGAGCAAGATTCAGGACAAGGAGGGTATTCCCCCTGATC 588546
Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421
||||||| || || | ||| || || ||| |||| || | |||||| | | ||||||||
Sbjct 588547 AACAGCGTCTTATCTTCGCTGGTAAGCAGTTGGAAGATGGTCGCACCTTAAGCGACTACA 588606
Query 38422 ACATCCAAAAGGA 38434
|||| || |||||
Sbjct 588607 ACATTCAGAAGGA 588619
Score = 89.7 bits (98), Expect = 5e-13
Identities = 145/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 38250 ATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGC 38309
||| |||| || || ||||| ||||| |||||||| | || |||||| | |||| | |
Sbjct 587979 ATAGTCGTCAAGACCCTCACTGGCAAGACCATCACTCTTGAGGTCGAGTCGTCCGATACC 588038
Query 38310 GTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGG 38369
| | | |||| ||| || | ||||| ||||| || || | ||||| |||||
Sbjct 588039 ATCGACAATGTTAAGTCAAAGATTCAGGACAAGGAGGGCATCCCTCCTGACCAGCAGCGC 588098
Query 38370 CTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAA 38429
|| || | || || || || || || || | || ||||| |||||||||||| ||
Sbjct 588099 CTGATCTTTGCTGGAAAGCAACTCGAAGATGGCCGAACCCTTGCCGACTACAACATTCAG 588158
Query 38430 AAGGAAGCGACGCTGCATTTGGTGCTGCG 38458
|||||| | || || ||| | || || ||
Sbjct 588159 AAGGAATCTACCCTTCATCTCGTCCTCCG 588187
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500164584661760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |