Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702635 .1_202016-08-10] 1,314 sequences; 48,396,317 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq454 208 9e-49 seq526 134 2e-26 >seq454 Length=245286 Score = 208 bits (230), Expect = 9e-49 Identities = 1139/1783 (64%), Gaps = 55/1783 (3%) Strand=Plus/Plus Query 75211 CCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGT 75270 ||| ||| ||||| ||||||| || | | || || || || || || || || Sbjct 10485 CCCTCAGCACATGATCATGCGTGTGTCTGTTGGTATTTGGGGTGATGATATCGAGCGAGT 10544 Query 75271 CTTGGAGACATACGACAAGATGTCCCAAGGTA--TGTTCATTCACGCAACACCAACCCTC 75328 ||||||||||||| || ||||||| || | | |||| || || | || || ||| Sbjct 10545 CTTGGAGACATACAACCTGATGTCC--AGCAAATTCTTCACACATGCTTCTCCCACGCTC 10602 Query 75329 TTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAG 75388 ||||| || || || || || || |||| ||||||| | | | | ||||| Sbjct 10603 TTCAACGCCGGCACCCCTCAGCCCCAATTGTCATCTTGCTTCTTGGTTGATATGAAGGAC 10662 Query 75389 GACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCT 75448 ||| || | || ||||| | ||||| | | ||||| ||||| ||| |||| Sbjct 10663 GACAGTATTGAGGGAATCTACGATACTCTCAAGACCTGTGCCATGATCTCCAAGATGGCT 10722 Query 75449 GGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTAT-TCGGGGG-A 75506 || |||||||| || || | || | | | || | | ||| || ||| || | Sbjct 10723 GGTGGTATTGGTCTGAACGTGCACCGTATCCGTGCTACTGG--CTCCTACATCGCCGGTA 10780 Query 75507 CAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCT 75566 | || ||| ||| | ||| || |||| |||||||| || || ||| ||| || |||| Sbjct 10781 CCAACGGTACATCGAACGGTGTTGTTCCTATGCTTCGTGTCTTCAACAACACTGCTCGCT 10840 Query 75567 ATGTAAATCAAGCGGGGCGTC--GCAAGG-GGTCCATC-GCGGTCTACTTGGAACCATGG 75622 |||| | || | | ||| | || | ||| | | || ||||| | || || ||| Sbjct 10841 ATGTCGACCAGG-GTGGCAACAAGCGACCCGGTGCTTTTGCCATCTACCTCGAGCCTTGG 10899 Query 75623 CATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGG 75682 || | ||| || | ||||||||||| | || ||||| ||| | || |||| || | Sbjct 10900 CACTCTGATGTCTTCGAGTTCCTTGATCTCCGTAAGAACCACGGTAAAGAGGAGG-TCCG 10958 Query 75683 TGTA-GAGATCTCTTTTCATC--CCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAG 75739 || | || || |||| || ||| ||||| || || |||||||||||||| ||||| Sbjct 10959 TGCCCGTGACCT--TTTCCTCGCCCTTTGGATCCCTGATCTTTTCATGAAGCGTGTTGAA 11016 Query 75740 GAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTG 75799 || || | ||| | || | || || || || || || ||| ||||| Sbjct 11017 AAGAACGGCGACTGGACGCTGATGTGCCCCAACGAGTGCCCTGGCCTCGCCGACTGCTAC 11076 Query 75800 GGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGC---CAATGCG 75856 || |||||||| || || || ||| |||||| || ||||||| | | ||| | Sbjct 11077 GGAGAGGAGTTCGAGGCTCTGTACGAAAAGTACGAGAAGGAGGGCAAGGGTCGCAA---G 11133 Query 75857 ACTGTACCAGCCGCCGATG-TTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAAC 75915 ||| | | || | | || ||||| | || ||||| | | ||||| ||||| |||| Sbjct 11134 ACTAT-CAAGGCTCAGAAACTTTGGTACGCCATTCTTGAGGCCCAGACTGAGACCGGAAA 11192 Query 75916 ACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAAC 75975 |||| ||||| ||||||||||| || ||| ||||| ||||||||||| | || || Sbjct 11193 CCCATTCATGCTCTACAAGGATGCCTGCAACCGCAAGAGCAACCAAAAGAACCTCGGTAC 11252 Query 75976 AATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGC 76035 ||| ||||| || || ||||| |||||| | |||||| | || ||| || Sbjct 11253 CATCCGAAGCTCCAACCTGTGCACTGAAATTATTGAGTACTGTGCCCCTGACGAGGTCGC 11312 Query 76036 TGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAAT---GAAGAGACTCGCAC 76092 ||| ||||| | || || | || || || | |||| || ||| || || Sbjct 11313 TGTCTGCAACCTTGCCTCTCTGGCTCTGCCCTCTTTCATCAACTACGATGAGGCTTGC-- 11370 Query 76093 TTTTGATTATGAAAAACTT-CATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAG 76151 | || | | || || || || | ||| || |||||| || || ||| Sbjct 11371 -TACGACT-TCAAGAAGTTGCACAAGGTCAGTCAGGTTGTTATTCGCAACCTGAACAAGA 11428 Query 76152 TCATTGACAGAAATTTTTATCCCGTTGAGACTGCGCGAAAGTCTAATATGCGACACAGAC 76211 |||| || || || || || || || || || ||| ||||| ||| ||| Sbjct 11429 TCATCGATGTGAACCACTACCCTGTCCAGGAGGCTCGCAACAGTAACATGCGCCACCGAC 11488 Query 76212 CTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTT-TGTGCCGCTACGCATTT 76270 | |||||| | |||||||| || || || |||| || || | ||| | | | || Sbjct 11489 CCATTGGTCTTGGTGTTCAGGGCCTTGCCGATGCTTTCCTTGCTCTGCGCATGCCC-TTC 11547 Query 76271 GATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCATCC 76330 || ||| || || ||| | || | ||||| || ||||| || ||||| || Sbjct 11548 GAGTCACCCGAGGCTCGTGAGCTCAACAAGCAGATCTTCGAGACCATTTACCACGCTGCC 11607 Query 76331 CTGGAGGCGAGTTGTGAAT-TGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTC 76389 || || ||| | ||||| | | | ||| |||| || || | ||||| Sbjct 11608 CTCACTGCCTCC-GTGCAGCTGGCTAAGGAGGAGGGTCCCTACTCCACCTTCAAAGGTTC 11666 Query 76390 TCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAAGCTCAACTA 76449 ||||| || | || | || ||||| || |||||| || || || || || | || Sbjct 11667 CCCCGCCTCTGAGGGTATCCTCCAGTTCGACATGTGG-AACGTCAAGCCCT-CTGACCTC 11724 Query 76450 CG--ACTGGGA---TGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTT 76504 | ||||||| | ||| ||||| ||||| | || | ||||||||||| Sbjct 11725 TGGGACTGGGAGACTCTTCGAGAGGAAG---TCAAGACACACGGCATCCGTAACAGTCTG 11781 Query 76505 TTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTT 76564 | | || || ||||| || ||| ||| | || || |||| || || || ||||| Sbjct 11782 CTCCTTGCTCCTATGCCTACTGCCAGTACCTCCCAGATTCTGGGCAACAACGAGTGCTTC 11841 Query 76565 GAACCATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGTC 76624 || || ||||| | |||||||||| || | ||||| |||||||| ||||| Sbjct 11842 GAGCCCTACACCTCCAACATCTACCAACGACGTGTTCTCGCTGGTGAGTTCCAGGTTGTC 11901 Query 76625 AACAAGCACCTCGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATATGAAGGAT 76684 ||| || |||| ||||| | || ||||| |||||| | | ||||||| | Sbjct 11902 AACCCCTGGCTGCTCAAGGACCTTGTCGACATGGGTCTGTGGTCCGATGCTATGAAGAAC 11961 Query 76685 CTCATGGTGAAAGCGGGTGGTTCCATTCAAAATATCTCAGATATCCCAGATGATATCAAG 76744 | ||| | | | |||||||||||| || || | | ||||| | ||| ||||| Sbjct 11962 CGCATCATTGCTGAGAATGGTTCCATTCAGAACATTCCCAACATCCCTGCCGATGTCAAG 12021 Query 76745 AATCTCTACCGCACAGTGTGGGAAATCAAGATGAAAGATGTCATTGACATGGCCGCAGAT 76804 ||| || || || ||||| ||| | | ||| || | ||||| || ||| Sbjct 12022 GCTCTGTATAAGACCGTTTGGGAGATCTCTCAGCGCCAAGTCGTTCAGATGGCTGCTGAT 12081 Query 76805 CGTGGTCGCTTCATTGATCAAAGTCAAAGT--ATGAATCTATTCATGGAAAGTCCAACGA 76862 || ||| ||||||||||| |||| ||| |||| | |||| || || |||| Sbjct 12082 CGAGGTGCCTTCATTGATC--AGTCCCAGTCACTGAACATCCACATGAAAGACCCCACGA 12139 Query 76863 TGTCCAAGCTCTCTTCTATGCA-TATGTACGCGTGGAAACAGGGGCTCAAAACCGGAATG 76921 || |||| || | |||||| | || | || ||||| | || ||||| || || ||| Sbjct 12140 TGGGCAAGATCACCAGTATGCACTTTGCAGGC-TGGAAGCTTGGCCTCAAGACTGGCATG 12198 Query 76922 TACTATCTCCGATCAAAGGCGAAAGCCCGACCAATTCAGTTCA 76964 ||||| || || || |||| || || |||||||||| Sbjct 12199 TACTACCTTCGTACACAGGCTGCTGCTGCTCCTATTCAGTTCA 12241 >seq526 Length=378168 Score = 134 bits (148), Expect = 2e-26 Identities = 336/504 (67%), Gaps = 20/504 (4%) Strand=Plus/Minus Query 65023 AAGAAGGCGAAATGGGCAATGAAATGGTTTGAC-ACAAAGTCTCGCTCCTTCGCCGAGCG 65081 |||||||| | ||||| || |||| | | | || | ||| ||| || ||| |||| Sbjct 285155 AAGAAGGCCGACTGGGCCATCCGATGGATCCAGGATAAGGACTC-CTCATTTGCCCAGCG 285097 Query 65082 CCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATTTA 65141 || |||| || || ||| ||||||||||||||| || | ||| | |||| | Sbjct 285096 TCTCGTTGCTTTCGCTGCTGTTGAGGGTATCTTCTTCAGTGGTGCCTTCGCCTCTATCTT 285037 Query 65142 TTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCG 65201 ||| | |||||||| ||||||||||| || || |||||| || || || || || || Sbjct 285036 CTGGCTCAAGAAGCGTGGTCTCATGCCCGGTCTGACCTTCTCCAACGAGCTCATCTCTCG 284977 Query 65202 AGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGCTCTTCAAGACTTTGCGTAA---TAG 65258 ||||||||||| ||| || |||||| || ||| || | || | || | | Sbjct 284976 TGATGAGGGTCTTCACACTGACTTTGCC-TG--CCTCCTCCACTCTCACCTCAAGGGTCG 284920 Query 65259 ACCCACTACCGAAACTATCCACGCCATCGTGAAAGAGGCGGTTGAGATTGAGAAAGGGTT 65318 ||| | | | ||||| | ||| | | || || || ||||||| | | ||| Sbjct 284919 TGCCAGCAAGCAGATGATCCAGGATATCATTACTGATGCCGTCACGATTGAGCAGGAGTT 284860 Query 65319 CATCTTGGACGCACTCCCATGTAATCTCATCGGTATGAACTCTGAGAAGATGTCCGAGTA 65378 | || || || || || ||| || |||| ||||||||||| ||| |||| Sbjct 284859 CCTCACTGAGGCTCTTCCCTGTGCCCTTCTCGGCATGAACTCTGACCTCATGAAGCAGTA 284800 Query 65379 CATTGAGTATGTGTCGGATCGTCTCCTCAAACAAGTTG-GGGTGCCACCCA-----TTTG 65432 |||||||| || | ||||||||||| || | | || || | | ||| Sbjct 284799 CATTGAGTTCGTCGCTGATCGTCTCCT------TGTCGCGCTTGGCAACGAGAAGGTTTA 284746 Query 65433 GAACGCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGAAGACCAACTT 65492 || || | || || || ||||| ||||| ||||| ||||| ||| ||||||||||| Sbjct 284745 CAAGGCCACCAACCCCTTCGACTTCATGGAGAACATCTCCCTTGGTGGCAAGACCAACTT 284686 Query 65493 CTTTGAGAAGCGAGTTGGGGACTA 65516 ||| |||||||| |||| ||||| Sbjct 284685 CTTCGAGAAGCGTGTTGCCGACTA 284662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596559801344320