Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702635 .1_202016-08-10] 1,314 sequences; 48,396,317 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq454 179 1e-39 seq526 154 4e-32 seq716 93.3 1e-13 seq359 93.3 1e-13 >seq454 Length=245286 Score = 179 bits (198), Expect = 1e-39 Identities = 573/879 (65%), Gaps = 15/879 (2%) Strand=Plus/Minus Query 155630 GTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTT 155689 ||| || | ||| ||| ||||||||| || || |||||| || | ||||| ||||| Sbjct 11292 GTACTCAATAATTTCAGTGCACAGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTT 11233 Query 155690 AGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGC 155749 || | ||| || ||||||||||| || ||| ||||| |||| ||||| |||| || Sbjct 11232 GCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGC 11173 Query 155750 GTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGA 155809 || ||||| ||| || | | || || || |||| |||| ||| Sbjct 11172 CTCAAGAATGGCGTACCAAAGTTTCTGAGCCTTGATAGTCTTGCGACCCTTGCCCTCCTT 11113 Query 155810 CTCATA--TTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGG 155867 ||| || |||| || | ||| | | | ||||| ||||| || || || |||||| Sbjct 11112 CTCGTACTTTTCGTACAGAGCCTC--GAACTCCTCTCCGTAGCAGTCGGCGAGGCCAGGG 11055 Query 155868 CACTTATCGGGGCAAAACAGCGACCAAATTTTATTACCGATT--ACACGCTCCATAAATA 155925 |||| | |||||| | ||||| ||| || | || ||||||| ||| || | Sbjct 11054 CACTCGTTGGGGCACATCAGCGTCCAGTCGCCGTT--CTTTTCAACACGCTTCATGAAAA 10997 Query 155926 CATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGAT 155985 |||| ||||| || ||||||||| | || |||||| | ||||| | Sbjct 10996 GATCAGGGATCCAAAGGGCGAGGAAAAGGTCACGGGCACGGACCTCCTCTTTACCGTGGT 10937 Query 155986 TCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAA 156045 |||| || || || | ||| || | ||||| || ||||| || || || |||| Sbjct 10936 TCTTACGGAGATCAAGGAACTCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAA 10877 Query 156046 AACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACAC 156102 || ||| | |||| |||||||| || ||||| |||||||| || |||||||||| Sbjct 10876 AAGCACCGGGTCGCTTGTTGCCACCCTGGTCGACATAGCGAGCAGTGTTGTTGAAGACAC 10817 Query 156103 CTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATG 156162 |||||||||| || ||| || || || || ||||| ||| || | || |||| | Sbjct 10816 GAAGCATAGGAACAACACCGTTCGATGTACCGTTGGTACCGGCGATGTAGGAGCCAGTAG 10757 Query 156163 AGCGAACATTATGAATATGTAGTCCAATACCACCTGACCAT-TTAGAAATTTGAGCGCAT 156221 || | | || | | || ||||||||||| | |||| || || || || || Sbjct 10756 CACGGATACGGTGCACGTTCAGACCAATACCACCAG-CCATCTTGGAGATCATGGCACAG 10698 Query 156222 TCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCAT-TGATAGTAGATAGCA 156280 ||| | ||||| | | || || |||||| || || | ||| | | ||| |||| Sbjct 10697 GTCTTGAGAGTATCGTAGATTCCCTCAATACTGTCGTCCTTCATATCAACCAAGA-AGCA 10639 Query 156281 CGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAA 156340 || ||||| || | || || || |||||||| || || || | ||||| | || Sbjct 10638 AGATGACAATTGGGGCTGAGGGGTGCCGGCGTTGAAGAGCGTGGGAGAAGCATGTGTGAA 10579 Query 156341 ATACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGAAT 156400 | || | ||||| | |||||||||| | ||| | || | || ||| Sbjct 10578 GAATTTGCTGGACATCAGGTTGTATGTCTCCAAGACTCGCTCGATATCATCACCCCAAAT 10519 Query 156401 ACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATTCG 156460 || | ||| || | ||| ||| |||||||| ||||| |||||| || ||||| Sbjct 10518 ACCAACAGACACACGCATGATCATGTGCTGAGGGCGCTCGACAATCTTACCGTCAATCTT 10459 Query 156461 CAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATA 156499 || ||||||| || |||| ||| || || || || || Sbjct 10458 GAGGAGGTATGATCGCTCCAAAGTCTTGAAGCCAAAGTA 10420 >seq526 Length=378168 Score = 154 bits (170), Expect = 4e-32 Identities = 467/717 (65%), Gaps = 6/717 (1%) Strand=Plus/Minus Query 133232 GCGTTTTTTGCTGCGAGTGATGGTATTGTTCTTGAAAATTTAGGAACACGGTTTATGGGA 133291 || ||||| ||||| |||||||||||| || || | | || || | || Sbjct 285374 GCTTTTTTCGCTGCCTCTGATGGTATTGTCAACGAGAACCTCGTCGAGCGATTCAGTGGC 285315 Query 133292 GAAGTTCAACTGGCCGAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATC 133351 || || || | |||| || ||| ||| || || | ||||| |||||| || ||| Sbjct 285314 GAGGTCCAGATCCCCGAGGCTCGTTGCTTCTACGGCTTCCAGATCATGATGGAGAACATC 285255 Query 133352 CATTCTATCACATATTCTACTCTAATTGATACTTACATCAAAGATACCGTCCAGAAGCAC 133411 || || || || || || ||||| || |||||||| || ||| |||| | Sbjct 285254 CACTCCGAGACCTACTCCCTGCTCATTGACACCTACATCAAGGAGCCCGCCCAGCGAACC 285195 Query 133412 AAACTATTCAACGCCATTAGCGAATTTCCT-TGTATTAAAAAGAAATCTGACTGGGCTAT 133470 | || || ||||||||| | || ||| || || |||||| | |||||||| || Sbjct 285194 TACCTCTTTAACGCCATT-GAGACCATCCCCTGCATCCGAAAGAAGGCCGACTGGGCCAT 285136 Query 133471 TAAATGGATCCAGGACAAGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGT 133530 |||||||||||| ||| | ||||| |||||||||||||| |||| || Sbjct 285135 CCGATGGATCCAGGATAAGGACTCCTCATTTGCCCAGCGTCTCGTTGCTTTCGCTGCTGT 285076 Query 133531 AGAGGGCAtttttttCAGTGGTGCGTTCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTAT 133590 ||||| || || ||||||||||| ||| |||||| || ||||| || ||||||||| | Sbjct 285075 TGAGGGTATCTTCTTCAGTGGTGCCTTCGCCTCTATCTTCTGGCTCAAGAAGCGTGGTCT 285016 Query 133591 TCTACCTGGACTGTGTTTTTCTAACGAACTTATTTCAAGGGACGAGGCACTTCACACCGA 133650 | || || ||| || || ||||| || || || | || |||| |||||||| || Sbjct 285015 CATGCCCGGTCTGACCTTCTCCAACGAGCTCATCTCTCGTGATGAGGGTCTTCACACTGA 284956 Query 133651 ATTTGCCGTTTTACTTCACTCTAAATTAGAGCGACCACTCAAAAAGAATAAGATTGAAGA 133710 |||||| | || |||||| | | || | | || ||| | | ||| | || Sbjct 284955 CTTTGCCTGCCTCCTCCACTCTCACCTCAAGGGTCGTGCCAGCAAGCAGATGATCCAGGA 284896 Query 133711 AATTATTAGAGAAGCGGTTGAAATTGAGGTTGAATTTATCAATAGTGCTCTGCC--GTGC 133768 || |||| || || || |||||| || || ||| | ||||| || |||| Sbjct 284895 TATCATTACTGATGCCGTCACGATTGAGCAGGAGTTCCTCACTGAGGCTCTTCCCTGTGC 284836 Query 133769 CGTTTAATTGGTATGAATGATGTGCTGATGCAGCGTTATATTGAATTTGTAGCTGACAGA 133828 | || | || ||||| || || ||| ||| || ||||| || || ||||| | Sbjct 284835 CCTT--CTCGGCATGAACTCTGACCTCATGAAGCAGTACATTGAGTTCGTCGCTGATCGT 284778 Query 133829 TTGGCCGTTCAGTTAGGTGGGGATAAGATTTACGGTTCCGCCAATCCATTCGACTGGATG 133888 | || | | || || ||| ||||| || |||| || ||||||| ||| Sbjct 284777 CTCCTTGTCGCGCTTGGCAACGAGAAGGTTTACAAGGCCACCAACCCCTTCGACTTCATG 284718 Query 133889 GAGAGCATTAGCATTGAATCAAAGACTAATTTCTTCGAGGCGAGGGTAGCCGAATAC 133945 |||| ||| | ||| ||||| || ||||||||| | | || ||||| ||| Sbjct 284717 GAGAACATCTCCCTTGGTGGCAAGACCAACTTCTTCGAGAAGCGTGTTGCCGACTAC 284661 >seq716 Length=967027 Score = 93.3 bits (102), Expect = 1e-13 Identities = 105/140 (75%), Gaps = 3/140 (2%) Strand=Plus/Minus Query 301813 AGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCA 301872 |||||||| | | ||| || |||||| | || ||||| |||||||| |||||||| Sbjct 86488 AGAATTTCCTTGAGACGTGGCACACCAAGAGTAACGTT---CTTGGACGACACACCAGCG 86432 Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATC 301932 || ||||| || ||||| || | ||||||| |||||||||||| || || || | Sbjct 86431 AAATGGAAGGTGTTCAGTGTCATCTGAGTAGCAGGCTCACCAATAGACTGCGCAGCCAGA 86372 Query 301933 ATACCAACCATTTCTCCTGG 301952 | |||||||||||| || || Sbjct 86371 ACACCAACCATTTCACCAGG 86352 >seq359 Length=402776 Score = 93.3 bits (102), Expect = 1e-13 Identities = 119/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 251407 ATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGA 251466 || || ||||| | | || || ||||| | | ||||||| || | ||| | || || Sbjct 401821 ATGAGTCCACAAATCTCGCAGACGTGGACACGGAAAGCATCCGACACCTCAAACAGACGC 401762 Query 251467 CCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAA 251526 |||| ||| || ||||| || | |||||||||||||| |||||||| ||||| Sbjct 401761 TCCTTCAGGAAAGCAGCGGCACCATGAGCGATCATACAATCACGTTCCATTTCTCCGAAT 401702 Query 251527 CGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGT 251570 || ||||||||||| ||||| | |||||| |||| || || || Sbjct 401701 CGGAGACCACCATCACGAGCACGACCCTCAACAGGTTGTCGGGT 401658 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471792821030818