Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702635
.1_202016-08-10] 1,314 sequences; 48,396,317 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq454 132 6e-25
seq269 132 6e-25
seq526 114 2e-19
>seq454
Length=245286
Score = 132 bits (146), Expect = 6e-25
Identities = 184/258 (71%), Gaps = 0/258 (0%)
Strand=Plus/Minus
Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124
||||||||| ||||| || |||| ||| ||||| || ||||| || || | ||||| ||
Sbjct 10851 CTGGTCGACATAGCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAACACCGTTCGA 10792
Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184
|||||||| || || | ||||| ||| | || || | |||| || | ||
Sbjct 10791 TGTACCGTTGGTACCGGCGATGTAGGAGCCAGTAGCACGGATACGGTGCACGTTCAGACC 10732
Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244
|| || || ||| ||||||||| | || || ||||| || |||||||| |||||
Sbjct 10731 AATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGTAGATTCCCTC 10672
Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304
|| |||| ||||||| || || | ||||| || || ||| || || | |||||
Sbjct 10671 AATACTGTCGTCCTTCATATCAACCAAGAAGCAAGATGACAATTGGGGCTGAGGGGTGCC 10612
Query 1630305 GGCGTTGAAGAGCGTGGG 1630322
||||||||||||||||||
Sbjct 10611 GGCGTTGAAGAGCGTGGG 10594
>seq269
Length=172993
Score = 132 bits (146), Expect = 6e-25
Identities = 96/111 (86%), Gaps = 0/111 (0%)
Strand=Plus/Minus
Query 1592190 CCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGA 1592249
||||||||||||||||||||||||| || ||| | || |||||| |||| || |||||||
Sbjct 41471 CCAACTACCTCGACATCAAGCCTCTTCTTGATGTCGGCTGCAAGACTGTTGCAAACATGA 41412
Query 1592250 TCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAGTACG 1592300
||||||||||||| ||||| |||||||||||||| || ||||| | | |||
Sbjct 41411 TCAAGGGCAAGTCTCCCGAAGAGATCCGCAAGACTTTCAACATTACGAACG 41361
>seq526
Length=378168
Score = 114 bits (126), Expect = 2e-19
Identities = 200/286 (70%), Gaps = 5/286 (2%)
Strand=Plus/Plus
Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238
||| || || ||| ||| | |||||| |||| || ||||||||||| || |||||
Sbjct 284967 ACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCGGGCATGAGACCACGCTT 285026
Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298
||||||||| ||||| | | ||| || ||| ||||| ||||| || || || ||
Sbjct 285027 CTTGAGCCAGAAGATAGAGGCGAAGGCACCACTGAAGAAGATACCCTCAACAGCAGCGAA 285086
Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCA 869358
| | ||| |||| |||||| || || | ||| | | |||||| || |||||
Sbjct 285087 AGCAACGAGACGCTGGGCAAA--TGAGGA-GTCCTTATCCTGGATCCATCGGATGGCCCA 285143
Query 869359 GTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGT-GGTCCTTTT 869417
||||||||| || | | | || | || || |||||| |||||||| ||| | |
Sbjct 285144 GTCGGCCTTCTTTCGGATGCAGGGGATGGTCTCAATGGCGTTAAAGAGGTAGGTTC-GCT 285202
Query 869418 CGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTC 869463
||| || ||||||| |||||||| || || || || ||||||||
Sbjct 285203 GGGCGGGCTCCTTGATGTAGGTGTCAATGAGCAGGGAGTAGGTCTC 285248
Score = 100 bits (110), Expect = 3e-15
Identities = 162/233 (70%), Gaps = 0/233 (0%)
Strand=Plus/Plus
Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750
||||| ||| ||| | || ||| |||||| |||||||||||||| | || |||||
Sbjct 284653 GCCTTCTGGTAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAGGGAGATG 284712
Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810
|||||| | ||| ||||||| | |||||| ||| ||| || |||| |
Sbjct 284713 TTCTCCATGAAGTCGAAGGGGTTGGTGGCCTTGTAAACCTTCTCGTTGCCAAGCGCGACA 284772
Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870
|| || || || ||||| ||||| |||||||| ||||||| | | |||||||||||
Sbjct 284773 AGGAGACGATCAGCGACGAACTCAATGTACTGCTTCATGAGGTCAGAGTTCATGCCGAGA 284832
Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTC 868923
|| || || || | ||| | | ||||| | ||| ||| |||||| ||
Sbjct 284833 AGGGCACAGGGAAGAGCCTCAGTGAGGAACTCCTGCTCAATCGTGACGGCATC 284885
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6107031367006538
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |