Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702635 .1_202016-08-10] 1,314 sequences; 48,396,317 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq595 107 5e-18 >seq595 Length=961575 Score = 107 bits (118), Expect = 5e-18 Identities = 157/220 (71%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTC--TG 206230 ||||| ||| || || ||||| ||||| || ||||| | || || || || | || Sbjct 588432 CAGATTTTTGTGAAGACTCTCACCGGAAAGACCATCACCCTTGAGGTCGA--GTCCAGTG 588489 Query 206231 ACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTC 206290 |||| |||| || ||| |||||||| || || || || ||| || || | Sbjct 588490 ACACTATCGACAACGTGAAGAGCAAGATTCAGGACAAGGAGGGTATTCCCCCTGATCAAC 588549 Query 206291 AAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACG 206350 | | ||||||||||| || ||||||||||||||||| | || || ||| |||||| Sbjct 588550 AGCGTCTTATCTTCGCTGGTAAGCAGTTGGAAGATGGTCGCACCTTAAGCGACTACAACA 588609 Query 206351 TCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 | ||||| ||||| ||||||||||| ||| | ||||||| Sbjct 588610 TTCAGAAGGAGTCAACTCTTCACCTCGTTCTCCGACTTCG 588649 Score = 86.0 bits (94), Expect = 1e-11 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||||| | ||| ||||||||||| ||||| ||||| | || ||||| || || Sbjct 588649 CGAAGTCGGAGAACGAGGTGAAGAGTTGACTCCTTCTGAATGTTGTAGTCGCTTAAGGTG 588590 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 | |||||||||| |||||| || ||||||||||| || |||||| Sbjct 588589 CGACCATCTTCCAACTGCTTACCAGCGAAGATAAGACGCTGTTGA 588545 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181800903308194