Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702635 .1_202016-08-10] 1,314 sequences; 48,396,317 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq595 183 7e-41 seq382 176 1e-38 seq466 138 3e-27 seq454 109 1e-18 >seq595 Length=961575 Score = 183 bits (202), Expect = 7e-41 Identities = 173/221 (78%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||||| || || ||||||||||| ||||| || || ||||| || || | ||| Sbjct 588649 CGAAGTCGGAGAACGAGGTGAAGAGTTGACTCCTTCTGAATGTTGTAGTCGCTTAAGGTG 588590 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | |||||||||| |||||| || ||||||||||| || ||||| ||||| |||| || Sbjct 588589 CGACCATCTTCCAACTGCTTACCAGCGAAGATAAGACGCTGTTGATCAGGGGGAATACCC 588530 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 ||||||||||| ||||| |||||||| ||||| |||||| | || ||||| || Sbjct 588529 TCCTTGTCCTGAATCTTGCTCTTCACGTTGTCGATAGTGTCACTGGACTCGACCTCAAGG 588470 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| |||||||| ||||||||||| ||||| | |||||| Sbjct 588469 GTGATGGTCTTTCCGGTGAGAGTCTTCACAAAAATCTGCAT 588429 Score = 154 bits (170), Expect = 3e-32 Identities = 154/200 (77%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| || ||||| || || || || || ||||| || || |||||||| | |||||| Sbjct 588184 AGGACGAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCGGCAAGGGTTCGGCCATCT 588125 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || ||||| || || ||||| ||||| || ||||||||||| | || ||||||||| Sbjct 588124 TCGAGTTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCC 588065 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || |||||| || || || |||||||| || || || ||||| |||||||| ||| Sbjct 588064 TGAATCTTTGACTTAACATTGTCGATGGTATCGGACGACTCGACCTCAAGAGTGATGGTC 588005 Query 211083 TTTCCCGTGAGAGTCTTTAC 211102 || || ||||| ||||| || Sbjct 588004 TTGCCAGTGAGGGTCTTGAC 587985 Score = 152 bits (168), Expect = 1e-31 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || |||||||||||||||||||| || || ||||| ||||| | || || | || || Sbjct 587902 AGAACAAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGAGAGAGTGCGGCCGTCC 587843 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| ||||| || | |||||| ||||| || || | || ||||||||| Sbjct 587842 TCAAGCTGCTTGCCGGCGAAAATCAAGCGTTGCTGGTCGGGGGGGATGCCCTCCTTGTCC 587783 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || || || ||||| ||||| || ||||||||||| ||||| ||| Sbjct 587782 TGAATCTTGGACTTGACATTGTCGATAGTGTCGGAAGACTCAACCTCGAGGGTGATGGTC 587723 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || | ||||| || || | |||||| Sbjct 587722 TTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 587691 Score = 149 bits (164), Expect = 1e-30 Identities = 166/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || | ||| ||||| || || || || ||||| || || | ||| || Sbjct 588422 ACGAAGACGGAGAACCAAGTGGAGAGTAGATTCCTTCTGAATGTTGTAGTCGGAAAGAGT 588363 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||| || |||||||| |||||||| || || ||||| || ||||||| || Sbjct 588362 TCGGCCATCTTCAAGTTGCTTGCCAGCGAAGATGAGTCGCTGTTGATCGGGAGGAATACC 588303 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||||||||||| ||||| || || ||||| || || || || || || Sbjct 588302 CTCCTTGTCCTGGATCTTGCTCTTCACATTATCAATGGTATCGGATGACTCGACTTCCAG 588243 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| || |||||||| ||||| ||||| || || | ||||| Sbjct 588242 AGTAATGGTCTTTCCAGTGAGGGTCTTGACGAAGATTTGCAT 588201 >seq382 Length=696405 Score = 176 bits (194), Expect = 1e-38 Identities = 168/215 (78%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| || |||||||| || |||||||| || || ||||| | |||||| Sbjct 112908 AGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGTCCATCC 112849 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| || ||||| || || || |||||||| || | || ||||||||| Sbjct 112848 TCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 112789 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| ||||||||||| || || ||||| || ||||||||| Sbjct 112788 TGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTC 112729 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || |||||||| ||||| || || | |||||| || Sbjct 112728 TTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTT 112694 >seq466 Length=609498 Score = 138 bits (152), Expect = 3e-27 Identities = 138/179 (77%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 || |||||||| || || | || || | ||||| || |||||||| || |||||||| Sbjct 468988 TTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCGAGCTGCTTACCAGCGAAGATC 468929 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 || || |||||||| || |||| || ||||||||||||||||| || || || ||| Sbjct 468928 AGTCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 468869 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105 |||||||| ||| || |||||||| ||||| ||||| ||||| || ||||| || || Sbjct 468868 ATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 468810 >seq454 Length=245286 Score = 109 bits (120), Expect = 1e-18 Identities = 195/280 (70%), Gaps = 10/280 (4%) Strand=Plus/Minus Query 178093 GTTCTTTTGGTTGCTCTTTC---TGCAAATGGCATCTTTGTACGCAATGAAGGGCATTCC 178149 |||||||||||||||||| | |||| |||||| ||||| ||||| || |||| Sbjct 11244 GTTCTTTTGGTTGCTCTTGCGGTTGCA---GGCATCCTTGTAGAGCATGAATGGGTTTCC 11188 Query 178150 CACCTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTCTTTTT 178209 ||||| || ||| | |||||| | |||||| | ||| || || |||||| Sbjct 11187 GGTCTCAGTCTGGGCCTCAAGAATGGCGTACCAAAGTTTCTGAGCCTTGATAGTCTTGCG 11128 Query 178210 GGCTTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAGACATC 178269 | || || || ||||||||||||| ||| || ||||||| ||| ||| ||| || Sbjct 11127 ACCCTTGCCCTCCTTCTCGTACTTTTCGTACAGAGCCTCGAACTCCTCTCCGTAGCAGTC 11068 Query 178270 ATCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCG-TCTTCCTTC-ACT 178327 |||| || || ||| |||||||| | || |||| | ||| |||| ||| || Sbjct 11067 GGCGAGGCCAGGGCACTCGTTGGGGCACATCAGCGTCCAGTCGCCGTTCTT--TTCAACA 11010 Query 178328 CGTTTCATGAAGAGGTCAGAGGTCCAGATGGCATAGAAAA 178367 || |||||||| || |||| | |||| | ||| ||||| Sbjct 11009 CGCTTCATGAAAAGATCAGGGATCCAAAGGGCGAGGAAAA 10970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159132484951610