Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702655
.1_202016-08-10] 1,501 sequences; 51,609,830 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq1081 104 3e-17
seq58 96.9 4e-15
seq324 87.8 2e-12
>seq1081
Length=286081
Score = 104 bits (114), Expect = 3e-17
Identities = 142/196 (72%), Gaps = 2/196 (1%)
Strand=Plus/Plus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
|||||| || || ||||| || ||| || || | || || |||||||| ||||| ||
Sbjct 157071 CTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGTCCATCCTCGAGCTGCTTGCCAGCAAA 157130
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111
||||||||||||||||| | || | || |||||||||| ||| || |||| |||
Sbjct 157131 GATGAGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGT 157189
Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170
| | | |||||| || ||||| || | ||||| || || ||||| || ||||| |
Sbjct 157190 TGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGA 157249
Query 43171 CAAAGATTTGCATTTT 43186
| || || ||||| ||
Sbjct 157250 CGAAAATCTGCATCTT 157265
>seq58
Length=488489
Score = 96.9 bits (106), Expect = 4e-15
Identities = 130/181 (72%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 42994 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 43053
|||| || || ||||| || | ||||| || | || || ||||||||||||||||| |
Sbjct 8742 CCTTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCGAGCTGCTTACCAGCGAAGA 8801
Query 43054 TGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 43113
| |||||||| ||||| | || | || |||||||||| ||| || |||| |
Sbjct 8802 TCAGTCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 8861
Query 43114 CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAA 43173
| | ||||| || || || |||| |||||||| |||||||| || ||||| || |
Sbjct 8862 CGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGA 8921
Query 43174 A 43174
|
Sbjct 8922 A 8922
>seq324
Length=941764
Score = 87.8 bits (96), Expect = 2e-12
Identities = 129/180 (72%), Gaps = 2/180 (1%)
Strand=Plus/Minus
Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052
||||| ||||| ||||| || || || || || | || || || ||||| ||||| ||
Sbjct 282985 TCCTTCTGAATGTTGTAGTCGGCAAGGGTTCGGCCATCTTCGAGTTGCTTTCCAGCAAAG 282926
Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112
|| || ||||||||||| | || | || |||||||||| ||| | |||| | | | |
Sbjct 282925 ATCAGGCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCC-TGAATCTTTGACTTAACATT 282867
Query 43113 G-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171
| | | || ||| ||| || || || | |||||||| ||||| || || ||||| ||
Sbjct 282866 GTCGATGGTATCGGACGACTCGACCTCAAGAGTGATGGTCTTGCCAGTGAGGGTCTTGAC 282807
Score = 87.8 bits (96), Expect = 2e-12
Identities = 134/191 (70%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052
||||| ||||| ||||| || | ||||| || | || || || ||||| ||||||||
Sbjct 283213 TCCTTCTGAATGTTGTAGTCGGAAAGAGTTCGGCCATCTTCAAGTTGCTTGCCAGCGAAG 283154
Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112
||||||||||| || |||| || | | |||||||||| ||| || || | |
Sbjct 283153 ATGAGTCGCTGTTGATCGGGAGGAATACCCTCCTTGTCCTGGATCTTGCTCTTCACATTA 283094
Query 43113 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172
| | || ||| || || || || | || ||||| || || || || ||||| ||
Sbjct 283093 TCAATGGTATCGGATGACTCGACTTCCAGAGTAATGGTCTTTCCAGTGAGGGTCTTGACG 283034
Query 43173 AAGATTTGCAT 43183
|||||||||||
Sbjct 283033 AAGATTTGCAT 283023
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571806871272280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |