Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702655
.1_202016-08-10] 1,501 sequences; 51,609,830 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq546 246 4e-60
seq832 145 1e-29
>seq546
Length=689558
Score = 246 bits (272), Expect = 4e-60
Identities = 567/843 (67%), Gaps = 21/843 (2%)
Strand=Plus/Minus
Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078
|||||| |||||||||| |||||| |||| ||||| ||||| | || ||| | |||||
Sbjct 567483 ATTTGGCAAATGTACAAGAAGGCTGAGGCTTCCTTCTGGACTGCTGAGGAGATTGATCTT 567424
Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138
|||||||| || | || ||| | | || |||||| ||||| || | ||
Sbjct 567423 TCCAAGGATCTCCATGACTGGAACAACCGCCTGACTGCCGATGAGCAGTTCTTCGTCTCT 567364
Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACG 125197
||||| | || || || || | ||| ||||| || |||||||| || || || || ||
Sbjct 567363 CACATCCTTGCTTTTTTCGCTGCCTCTGATGGTATTGTCAACGAGAACCTCGTCGAG-CG 567305
Query 125198 ATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGT-GCTTTTACGGATTCCAAATCATGA 125256
|||| | ||| | || || |||| |||| |||| ||||| ||||| |||||||
Sbjct 567304 ATTCAGTGGCGAGGTCCAGATCCCCGAGGC-TCGTTGCTTCTACGGCTTCCAGATCATGA 567246
Query 125257 TTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCC-G 125315
| |||||| | ||||| || | ||||| || ||||||| ||||| || || |
Sbjct 567245 TGGAGAACATCCACTCCGAGACCTACTCCCTGCTCATTGACACCTACATCAAGGAGCCCG 567186
Query 125316 CAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCT 125375
| | ||| | ||||||||||| || || || | || | || || || |||||
Sbjct 567185 CCCAGCGAACCTAC-CTCTTTAACGCCATTGAGACCATCCCCTGCATCCGAAAGAAGGCC 567127
Query 125376 CAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCA 125435
| |||| || || |||||| | || | | || || | ||| | | || || ||
Sbjct 567126 GACTGGGCCATCCGATGGATCCAGGATAAGGACTCCTCATTTGCCCAGCGTCTCGTTGCT 567067
Query 125436 TTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAG 125495
||||| || || ||||| |||||||| ||| || || | ||||| |||||||||
Sbjct 567066 TTCGCTGCTGTTGAGGGTATCTTCTTCAGTGGTGCCTTCGCCTCTATCTTCTGGCTCAAG 567007
Query 125496 AAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGC 125555
||||| || ||||||||||| ||||| | |||||| | || ||||| || |||||
Sbjct 567006 AAGCGTGGTCTCATGCCCGGTCTGACCTTCTCCAACGAGCTCATCTCTCGTGATGAGGGT 566947
Query 125556 CTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCAGATCC 125615
|| ||| |||||||||| || || | ||| | | | | || | | ||
Sbjct 566946 CTTCACACTGACTTTGCCTGCCTCCT------CCACTCT---CACCTCAAGGGTCGTGCC 566896
Query 125616 AGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTA 125675
||| | | | | || | || | || |||||||| | ||| || || ||||| ||
Sbjct 566895 AGCAAGCAGATGATCCAGGATATCATTACTGATGCCGTCACGATTGAGCAGGAGTTCCTC 566836
Query 125676 ACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATA 125735
|| || | || || | | | |||||||||| | || ||| |||||||
Sbjct 566835 ACTGAGGCTCTTCCCTGTGCCCTTCTCGGCATGAACTCTGACCTCATGAAGCAGTACATT 566776
Query 125736 GAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGC--CG-CAAGATTTACAACGCC 125792
||||| || || |||||||| || || | ||||| || ||| ||||||| |||
Sbjct 566775 GAGTTCGTCGCTGATCGTCTCCTTGTCG---CGCTTGGCAACGAGAAGGTTTACAAGGCC 566719
Query 125793 AAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAG 125852
| || ||||| || |||||| | ||| || || | || ||||||||||| ||||||
Sbjct 566718 ACCAACCCCTTCGACTTCATGGAGAACATCTCCCTTGGTGGCAAGACCAACTTCTTCGAG 566659
Query 125853 AAG 125855
|||
Sbjct 566658 AAG 566656
>seq832
Length=168102
Score = 145 bits (160), Expect = 1e-29
Identities = 303/446 (68%), Gaps = 4/446 (1%)
Strand=Plus/Minus
Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935
||||| ||||| || || || || ||| | ||| ||||| | || ||||||||| | ||
Sbjct 151803 CAGGGTGGCAACAAGCGACCCGGTGCTTTTGCCATCTACCTCGAGCCTTGGCACTCTGAT 151744
Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995
|| || || || | || | || || ||| || || |||| || ||| | |||
Sbjct 151743 GTCTTCGAGTTCCTTGATCTCCGTAAGAACCACGGTAAAGAGGAGGTCCGTGCCCGTGAC 151684
Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC 97055
| || || || ||| | || ||| | ||||||||||| || | | ||| ||
Sbjct 151683 CTTTTCCTCGCCCTTTGGATCCCTGATCTTTTCATGAAGCGTGTTGAAAAGAACGGCGAC 151624
Query 97056 TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTT 97115
|||| || ||||||||| || || || || || |||| |||| || || |||||
Sbjct 151623 TGGACGCTGATGTGCCCCAACGAGTGCCCTGGCCTCGCCGACTGCTACGGAGAGGAGTTC 151564
Query 97116 GAGGCCAAGTACACGGCCTACGAGCAAGAGGGCC-GATACGTGAGACGAGTCGATGCACG 97174
||||| |||| |||||| | |||||| | || |||| | || | || |
Sbjct 151563 GAGGCTCTGTACGAAAAGTACGAGAAGGAGGGCAAGGGTCGCAAGACTA-TCAAGGCTCA 151505
Query 97175 AGAACTGTGGAAGGCCAT-CGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCT 97233
|||| ||| | ||||| | ||| ||| ||| ||||| |||| || | ||| ||||
Sbjct 151504 GAAACTTTGGTACGCCATTCTTGA-GGCCCAGACTGAGACCGGAAACCCATTCATGCTCT 151446
Query 97234 ACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCA 97293
|||||||| || || ||||| ||||||||| || | || |||||| ||||||
Sbjct 151445 ACAAGGATGCCTGCAACCGCAAGAGCAACCAAAAGAACCTCGGTACCATCCGAAGCTCCA 151386
Query 97294 ATCTGTGCACGGAAATTGTAGAGTAC 97319
| |||||||| |||||| | ||||||
Sbjct 151385 ACCTGTGCACTGAAATTATTGAGTAC 151360
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741045295876760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |