Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702655
.1_202016-08-10] 1,501 sequences; 51,609,830 total letters
Query= NC_005839.2
Length=131680
Score E
Sequences producing significant alignments: (Bits) Value
seq324 100 2e-16
>seq324
Length=941764
Score = 100 bits (110), Expect = 2e-16
Identities = 146/204 (72%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTCCAGCTG 48582
||||| ||| |||||| |||||||||||||||| | | || || ||||||| |||||
Sbjct 282715 TGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGAGAGAGTG-CGGCCGTCCTCAAGCTG 282657
Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642
||| ||| || |||| || || ||||| || || | | ||||||||| ||| ||
Sbjct 282656 CTTGCCGGCGAAAATCAAGCGTTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGAATCTT 282597
Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702
||||| | | || || |||| |||||| ||||| || ||||| || |||||
Sbjct 282596 GGACTTGACATTGTCGATAGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCTTGCCGGT 282537
Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726
| || || || || ||||||||
Sbjct 282536 CAAGGTCTTGACGAAGATCTGCAT 282513
Score = 89.7 bits (98), Expect = 4e-13
Identities = 146/206 (71%), Gaps = 6/206 (3%)
Strand=Plus/Minus
Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTG 48582
||||| || |||||| ||||||||||| || || | || || | || |||| |||
Sbjct 283453 TGAAGAGTTGACTCCTTCTGAATGTTGTAGTC-GCTTAAGGTGCGACCATCTTCCAACTG 283395
Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642
|||||| || | || | |||||| ||||| || | || ||||||||| ||| ||
Sbjct 283394 CTTACCAGCGAAGATAAGACGCTGTTGATCAGGGGGAATACCCTCCTTGTCCTGAATCTT 283335
Query 48643 CTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCG 48700
||| | | | || || || || | ||||| ||| | || ||||| || |||
Sbjct 283334 GCTCTTCACGTTGTCGATA--GTGTCACTGGACTCGACCTCAAGGGTGATGGTCTTTCCG 283277
Query 48701 GTGAGAGTTTTCACAAAAATCTGCAT 48726
|||||||| |||||||||||||||||
Sbjct 283276 GTGAGAGTCTTCACAAAAATCTGCAT 283251
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 421243493867501
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |