Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702655
.1_202016-08-10] 1,501 sequences; 51,609,830 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq660 105 1e-18
seq546 104 4e-18
>seq660
Length=43178
Score = 105 bits (116), Expect = 1e-18
Identities = 86/102 (84%), Gaps = 2/102 (2%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490
||| |||||||| || | ||||| | |||||||||||||| || ||||||||||| || |
Sbjct 13004 CGCCAAGCGTCACCGAAAGATCT-TGCGAGATAACATCCAGGGTATCACCAAGCCCGCCA 13062
Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532
|||| ||||| ||||| || ||||| ||||||||| ||||||
Sbjct 13063 TCCGACGTCTCGCTCGCCGAGGTGGTGTCAAGCGTATCTCTG 13104
Score = 95.1 bits (104), Expect = 2e-15
Identities = 121/167 (72%), Gaps = 0/167 (0%)
Strand=Plus/Plus
Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595
|| |||| || |||| || | |||| |||||| ||||||| || || |||| ||| |
Sbjct 13161 TGATCTACGAGGAGACCCGCGGTGTTCTGAAGACCTTCCTCGAGGGTGTCATCCGTGACG 13220
Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655
| || ||| ||||||||||| || || ||||| ||||| || | ||| | ||||| |
Sbjct 13221 CCGTCACCTACACCGAGCACGCCAAGCGCAAGACAGTCACATCTCTCGATGTTGTCTACG 13280
Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAATCT 16702
| |||| || |||||||| | | || ||||| || ||||| ||
Sbjct 13281 CCCTGAAGCGACAAGGCCGCACCCTCTACGGTTTCGGTGGTTAAGCT 13327
>seq546
Length=689558
Score = 104 bits (114), Expect = 4e-18
Identities = 85/101 (84%), Gaps = 2/101 (2%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
|| |||||||| || | ||| | | ||||| ||||| ||||||||||||||||| |||||
Sbjct 288475 GCCAAGCGTCACCGAAAGATTT-TGCGAGACAACATTCAAGGAATCACCAAGCCCGCTAT 288533
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532
||| ||||| ||||||||||| || ||||||||| | ||||
Sbjct 288534 CCGACGTCTCGCTCGTCGTGGCGGTGTCAAGCGTATTTCTG 288574
Score = 98.7 bits (108), Expect = 2e-16
Identities = 120/164 (73%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595
|| |||| || |||| |||| |||| | |||| ||||||| || || |||| || |
Sbjct 288636 TGATCTACGAGGAGACCCGTGGTGTTCTCAAGACCTTCCTCGAGGGTGTCATCCGCGACG 288695
Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655
|| || ||| || |||||||| || || ||||||||||||||| | || | ||||| |
Sbjct 288696 CTGTCACCTACACTGAGCACGCCAAGCGCAAGACTGTCACCTCCCTCGACGTGGTCTACG 288755
Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699
| | || || || || |||| | ||||||||||| |||||
Sbjct 288756 CTCTCAAGCGCCAGGGACGTACCCTCTATGGTTTTGGTGGTTAA 288799
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79073827625193
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |