Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702655 .1_202016-08-10] 1,501 sequences; 51,609,830 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq660 105 1e-18 seq546 104 4e-18 >seq660 Length=43178 Score = 105 bits (116), Expect = 1e-18 Identities = 86/102 (84%), Gaps = 2/102 (2%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| || | ||||| | |||||||||||||| || ||||||||||| || | Sbjct 13004 CGCCAAGCGTCACCGAAAGATCT-TGCGAGATAACATCCAGGGTATCACCAAGCCCGCCA 13062 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532 |||| ||||| ||||| || ||||| ||||||||| |||||| Sbjct 13063 TCCGACGTCTCGCTCGCCGAGGTGGTGTCAAGCGTATCTCTG 13104 Score = 95.1 bits (104), Expect = 2e-15 Identities = 121/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595 || |||| || |||| || | |||| |||||| ||||||| || || |||| ||| | Sbjct 13161 TGATCTACGAGGAGACCCGCGGTGTTCTGAAGACCTTCCTCGAGGGTGTCATCCGTGACG 13220 Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655 | || ||| ||||||||||| || || ||||| ||||| || | ||| | ||||| | Sbjct 13221 CCGTCACCTACACCGAGCACGCCAAGCGCAAGACAGTCACATCTCTCGATGTTGTCTACG 13280 Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAATCT 16702 | |||| || |||||||| | | || ||||| || ||||| || Sbjct 13281 CCCTGAAGCGACAAGGCCGCACCCTCTACGGTTTCGGTGGTTAAGCT 13327 >seq546 Length=689558 Score = 104 bits (114), Expect = 4e-18 Identities = 85/101 (84%), Gaps = 2/101 (2%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| || | ||| | | ||||| ||||| ||||||||||||||||| ||||| Sbjct 288475 GCCAAGCGTCACCGAAAGATTT-TGCGAGACAACATTCAAGGAATCACCAAGCCCGCTAT 288533 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532 ||| ||||| ||||||||||| || ||||||||| | |||| Sbjct 288534 CCGACGTCTCGCTCGTCGTGGCGGTGTCAAGCGTATTTCTG 288574 Score = 98.7 bits (108), Expect = 2e-16 Identities = 120/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595 || |||| || |||| |||| |||| | |||| ||||||| || || |||| || | Sbjct 288636 TGATCTACGAGGAGACCCGTGGTGTTCTCAAGACCTTCCTCGAGGGTGTCATCCGCGACG 288695 Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655 || || ||| || |||||||| || || ||||||||||||||| | || | ||||| | Sbjct 288696 CTGTCACCTACACTGAGCACGCCAAGCGCAAGACTGTCACCTCCCTCGACGTGGTCTACG 288755 Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | || || || || |||| | ||||||||||| ||||| Sbjct 288756 CTCTCAAGCGCCAGGGACGTACCCTCTATGGTTTTGGTGGTTAA 288799 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79073827625193