Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702655 .1_202016-08-10] 1,501 sequences; 51,609,830 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq324 89.7 4e-13 >seq324 Length=941764 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 21927 GATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAA 21986 || || |||||| | ||| | |||||| |||| ||||| |||||||| ||||| ||| Sbjct 283116 GACAAGGAGGGTATTCCTCCCGATCAACAGCGACTCATCTTCGCTGGCAAGCAACTTGAA 283175 Query 21987 GATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCATATGGTATTA 22046 ||| |||| | |||| ||||| |||||||||||||||||||| || |||| | Sbjct 283176 GATGGCCGAACTCTTTCCGACTACAACATTCAGAAGGAATCTACTCTCCACTTGGTTCTC 283235 Query 22047 CGTTTACGAGGAGG 22060 ||| | || || || Sbjct 283236 CGTCTTCGTGGTGG 283249 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 21907 ATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCT 21966 || ||||| ||| ||| || || ||||| | ||| |||| ||| | || |||| Sbjct 282868 ATGTTAAGTCAAAGATTCAGGACAAGGAGGGCATCCCTCCTGACCAGCAGCGCCTGATCT 282927 Query 21967 TTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAAT 22026 ||||||| || ||||| |||||| ||| | ||||| ||||| ||||||||||||| Sbjct 282928 TTGCTGGAAAGCAACTCGAAGATGGCCGAACCCTTGCCGACTACAACATTCAGAAGGAAT 282987 Query 22027 CTACTCTTCAT 22037 |||| |||||| Sbjct 282988 CTACCCTTCAT 282998 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358118248666354