Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702655 .1_202016-08-10] 1,501 sequences; 51,609,830 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq324 113 5e-20 >seq324 Length=941764 Score = 113 bits (124), Expect = 5e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || || |||| || || || || |||||||||||||| | || ||||| |||| Sbjct 282724 AGAACAAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGAGAGAGTGCGGCCGTCC 282665 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 ||||||||||||||||| |||| | || ||||||||||| || || || || || || Sbjct 282664 TCAAGCTGCTTGCCGGCGAAAATCAAGCGTTGCTGGTCGGGGGGGATGCCCTCCTTGTCC 282605 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| || | || || | || || || | || | |||| Sbjct 282604 TGAATCTTGGACTTGACATTGTCGATAGTGTCGGAAGACTCAACCTCGAGGGTGATGGTC 282545 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||||||||| || || ||||| || ||||| Sbjct 282544 TTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 282513 Score = 98.7 bits (108), Expect = 1e-15 Identities = 143/202 (71%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||||| || ||||| || ||||||||||| || || | ||| || | ||| Sbjct 283006 AGGACGAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCGGCAAGGGTTCGGCCATCT 282947 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || || ||||| || ||| | || || ||||||||||| ||||| || || || || || Sbjct 282946 TCGAGTTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCC 282887 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || ||| ||| ||| || | ||||| | || || || | ||| | |||| Sbjct 282886 TGAATCTTTGACTTAACATTGTCGATGGTATCGGACGACTCGACCTCAAGAGTGATGGTC 282827 Query 64412 TTGCCGGTCAAAGTTTTTACGA 64433 ||||| || | || || |||| Sbjct 282826 TTGCCAGTGAGGGTCTTGACGA 282805 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||| || ||||||||||| || | | || || | |||||||| |||||||| Sbjct 283219 GTAGATTCCTTCTGAATGTTGTAGTCGGAAAGAGTTCGGCCATCTTCAAGTTGCTTGCCA 283160 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | ||||| ||||| || ||||||||||| || || || || || || || ||| Sbjct 283159 GCGAAGATGAGTCGCTGTTGATCGGGAGGAATACCCTCCTTGTCCTGGATCTTGCTCTTC 283100 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| || | ||||| | || ||||| | ||| | |||||| || || | || Sbjct 283099 ACATTATCAATGGTATCGGATGACTCGACTTCCAGAGTAATGGTCTTTCCAGTGAGGGTC 283040 Query 64427 TTTACGAAAATTTGCAT 64443 || ||||| |||||||| Sbjct 283039 TTGACGAAGATTTGCAT 283023 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||| | || || || || |||| || || || || ||||||||||| || Sbjct 283477 CCACCGCGAAGTCGGAGAACGAGGTGAAGAGTTGACTCCTTCTGAATGTTGTAGTCGCTT 283418 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | |||||| | ||||| | |||||| || || | || || ||||| || || || ||| Sbjct 283417 AAGGTGCGACCATCTTCCAACTGCTTACCAGCGAAGATAAGACGCTGTTGATCAGGGGGA 283358 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || || || || || || || || ||| || || | || |||| || || || Sbjct 283357 ATACCCTCCTTGTCCTGAATCTTGCTCTTCACGTTGTCGATAGTGTCACTGGACTCGACC 283298 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | |||||| ||||| | ||| || || ||||| ||||| Sbjct 283297 TCAAGGGTGATGGTCTTTCCGGTGAGAGTCTTCACAAAAATCTGCAT 283251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499635425414440