Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702655 .1_202016-08-10] 1,501 sequences; 51,609,830 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq1081 107 2e-18 seq324 100 3e-16 seq58 84.2 2e-11 >seq1081 Length=286081 Score = 107 bits (118), Expect = 2e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||||||| || || |||||||| || || || | | Sbjct 157069 GACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGTCCATCCTCGAGCTGCTTGCCAGCA 157128 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || ||||| ||||| || || || || || ||||| ||| || || | Sbjct 157129 AAGATGAGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACG 157188 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||||| ||||||||||| | || | ||| || || || || || || Sbjct 157189 TTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTG 157248 Query 138601 ACAAAAATCTGCAT 138614 || ||||||||||| Sbjct 157249 ACGAAAATCTGCAT 157262 >seq324 Length=941764 Score = 100 bits (110), Expect = 3e-16 Identities = 143/198 (72%), Gaps = 4/198 (2%) Strand=Plus/Minus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 |||||||||| ||||||||||||||||| | || || || || | || ||||| | Sbjct 283446 TTGACTCCTTCTGAATGTTGTAGTCGCTTAAGGTGCGACCATCTTCCAACTGCTTACCAG 283387 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA 138538 |||| ||||||||||| || || || ||||| || ||||| ||| | || | || Sbjct 283386 CGAAGATAAGACGCTGTTGATCAGGGGGAATACCCTCCTTGTC-CTGAATCTTGCTCTTC 283328 Query 138539 A--TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGT 138596 | ||| || | ||||| | ||||| ||||| | || | || || || || ||||| Sbjct 283327 ACGTTG-TCGATAGTGTCACTGGACTCGACCTCAAGGGTGATGGTCTTTCCGGTGAGAGT 283269 Query 138597 TTTTACAAAAATCTGCAT 138614 || |||||||||||||| Sbjct 283268 CTTCACAAAAATCTGCAT 283251 Score = 87.8 bits (96), Expect = 2e-12 Identities = 132/184 (72%), Gaps = 4/184 (2%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || ||||| ||||||||||||||| | || || || |||||||| || || | | Sbjct 282988 GATTCCTTCTGAATGTTGTAGTCGGCAAGGGTTCGGCCATCTTCGAGTTGCTTTCCAGCA 282929 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-- 138538 |||| || ||||| ||||| ||||| || || || ||||| ||| | |||| ||| Sbjct 282928 AAGATCAGGCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTC-CTGAATCTTTGACTTAAC 282870 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 |||| || | ||| |||| |||||| ||||| | || | || || ||||| || || | Sbjct 282869 ATTG-TCGATGGTATCGGACGACTCGACCTCAAGAGTGATGGTCTTGCCAGTGAGGGTCT 282811 Query 138599 TTAC 138602 | || Sbjct 282810 TGAC 282807 >seq58 Length=488489 Score = 84.2 bits (92), Expect = 2e-11 Identities = 130/183 (71%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 138425 CCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGA 138484 |||| || |||||||||||| | ||| || |||||||| || ||||| | ||| Sbjct 8742 CCTTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCGAGCTGCTTACCAGCGAAGA 8801 Query 138485 TTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGT 138543 | || |||||||||||||| || || || || ||||| ||| || || | |||| Sbjct 8802 TCAGTCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTG- 8860 Query 138544 TCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACA 138603 || | |||||| | ||||| ||||||| || | || || || ||||| || || || Sbjct 8861 TCGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACG 8920 Query 138604 AAA 138606 ||| Sbjct 8921 AAA 8923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496253088876720