Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702655 .1_202016-08-10] 1,501 sequences; 51,609,830 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq832 244 1e-59 seq136 104 3e-17 seq546 82.4 9e-11 >seq832 Length=168102 Score = 244 bits (270), Expect = 1e-59 Identities = 1026/1599 (64%), Gaps = 57/1599 (4%) Strand=Plus/Plus Query 109500 GTTCATCGACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGTCGATGATACA 109559 ||||| ||||| |||||||| ||||| ||| |||||||| ||||| | | || Sbjct 150535 GTTCAGTGACTGGGACTGATCAATGAAGGCACCTCGATCAGCAGCCATCTGAACGA---- 150590 Query 109560 CTTTTGGCTAA----TTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGT 109615 ||| ||| | | ||||| || ||||| |||| | ||||| ||| | || |||| Sbjct 150591 CTTGGCGCTGAGAGATCTCCCAAACGGTCTTATACAGAGCCTTGACATCGGCAGGGATGT 150650 Query 109616 CCACGATGTTTTGAATAGAGCCAC---CAGCCTTCACCATGAGATCCTTCATCTCTTTCG 109672 ||||| ||||| || ||| |||| | | || | | |||||| | | | Sbjct 150651 TGGGAATGTTCTGAATGGAACCATTCTCAGCAATGA---TGCGGTTCTTCATAGCATCGG 150707 Query 109673 ACCAGAGACCGACCTTTTTGAGATCGTCAACAAGATGCTTG---TTGACCACGACAAATT 109729 |||| ||||| | | | || | ||| || || | ||||| || || | Sbjct 150708 ACCACAGACCCA---TGTCGACAAGGTCCTTGAGCAGCCAGGGGTTGACAACCTGGAACT 150764 Query 109730 CACCAGCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGT 109789 ||||||| || ||||| |||||||||| | |||||||| ||||| ||||| |||| Sbjct 150765 CACCAGCGAGAACACGTCGTTGGTAGATGTTGGAGGTGTAGGGCTCGAAGCACTCGTTGT 150824 Query 109790 TGCCTAGGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGA 109849 |||| || || || | || || || ||||| ||||| | ||| |||||||| |||| Sbjct 150825 TGCCCAGAATCTGGGAGGTACTGGCAGTAGGCATAGGAGCAAGGAGCAGACTGTTACGGA 150884 Query 109850 GACCCTTCGTCTTTACCCGCTCACGCATTGCGTCCCAATCATAACGACCACTAAATTTAG 109909 || | ||||| || ||| || | | ||||| || | | || | Sbjct 150885 TGCCGTGTGTCTTGACTTCCTCTCGAAGAGTCTCCCAGTCCCAGAGGTCAGAG------G 150938 Query 109910 TCTCACCATCCCACATATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAAC 109969 || | | |||||| || || || | |||||||| || || ||||| ||||| Sbjct 150939 GCTTGACGTTCCACATGTCGAACTGGAGGATACCCTCAGAGGCGGGGGAACCTTTGAAGG 150998 Query 109970 TCTCGTACGACCCCTCAACCTCGGCCAACTCGGATGAAGCCTCT-AGTGCCGCATGATAC 110028 | ||| | ||||| ||| |||| || | | | || | | || || || || || Sbjct 150999 TGGAGTAGGGACCCTCCTCCTTAGCCAGCT-GCACGGAGGCAGTGAGGGCAGCGTGGTAA 151057 Query 110029 ATAGTCTCAAAAATATGAGCATTCATGAGG---CGAGACTCTTCACAGTCGAAGGGAAGA 110085 || ||||| || || || || |||| |||| ||| | |||||||| | Sbjct 151058 ATGGTCTCGAAGATCTGC---TTGTTGAGCTCACGAGCCTCGGGTGACTCGAAGGGCATG 151114 Query 110086 CCACAAAG-AATAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTT 110144 | || || || || |||| || || ||||||||||| ||||||||||| || || Sbjct 151115 CG-CAGAGCAAGGAAAGCATCGGCAAGGCCCTGAACACCAAGACCAATGGGTCGGTGGCG 151173 Query 110145 CATGTTAGAGCGTCGAGCAGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAG 110204 ||||||| | ||||| | || ||||| ||| ||||||| | || || Sbjct 151174 CATGTTACTGTTGCGAGCCTCCTGGACAGGGTAGTGGTTCACATCGATGATCTTGTTCAG 151233 Query 110205 ATTCTTCGTCACAGTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTC 110264 || | ||| || ||| | || | || | | | ||| | | | || Sbjct 151234 GTTGCGAATAACAACCTGACTGACCTTGTGCAACTTCTTGAAGTCGTA-GCAAGCCTCAT 151292 Query 110265 CTTA-TTGACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTT 110323 | || |||| | ||| ||||| | ||| ||||| ||||| |||| |||||| Sbjct 151293 CGTAGTTGATGAAAGAGGGCAGAGCCAGAGAGGCAAGGTTGCAGACAGCGACCTCGTCAG 151352 Query 110324 TGTCGGTGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCT 110383 | | ||| || | |||||| || |||| |||||| || ||| ||| | ||||| Sbjct 151353 GGGCACAGTACTCAATAATTTCAGTGCACAGGTTGGAGCTTCGGATGGTACCGAGGTTCT 151412 Query 110384 TCTGATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCG 110443 | || || ||| |||||| |||||||| ||||||||| ||||| | || || || | Sbjct 151413 TTTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCAG 151472 Query 110444 TCTGTGACTTGAGAATGGCCTTCCATACATCGGCGGCGGGGACAGT--TGCGTTAGCGAG 110501 |||| | || |||||||| | ||| | | || || ||| |||| | | Sbjct 151473 TCTGGGCCTCAAGAATGGCGTACCAAAGTTTCTGAGCCTTGATAGTCTTGCG--ACCCTT 151530 Query 110502 ACCTTCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAG 110561 || |||| ||||||||| ||||| |||| || |||| |||||| || | || Sbjct 151531 GCCCTCCTTCTCGTACTTTTCGTACAGAGCCTCGAACTCCTCTCCGTAGCAGTCGGCGAG 151590 Query 110562 ACCCTTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCAT 110621 || || || ||| || | || | ||| | || || ||||| | |||||| Sbjct 151591 GCCAGGGCACTCGTTGGGGCACATCAGCGTCCAGTCGCCGTTCTTTTCAACACGCTTCAT 151650 Query 110622 GAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACC 110681 ||| || ||||| ||||| | || ||||||||||||| ||| |||| || | ||| Sbjct 151651 GAAAAGATCAGGGATCCAAAGGGCGAGGAAAAGGTCACGGGCACGGACCTCCTCTTTACC 151710 Query 110682 TTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAG-- 110739 ||||| || || || | || || | || ||| |||||||| || ||||| ||| Sbjct 151711 GTGGTTCTTACGGAGATCAAGGAACTCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGAT 151770 Query 110740 ----ACAGCGATGGATCCCTTACGACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATT 110795 | ||| || || ||| | | || |||||| |||||||| || ||| || Sbjct 151771 GGCAAAAGCACCGGGTCGCTT--GTTG-CCACCCTGGTCGACATAGCGAGCAGTGTTGTT 151827 Query 110796 GAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGA 110855 |||||| | |||||||||| || || | ||| ||| || ||||| || ||| Sbjct 151828 GAAGACACGAAGCATAGGAACAACACCGTTCGATGTACCGTTGGTACCGGCGATGTAGGA 151887 Query 110856 CTTATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTG 110915 | | ||||| || ||| | | || |||||||||||| ||| ||| || Sbjct 151888 GCCAGTAGCACGGATACGGTGCACGTTCAGACCAATACCACCAGCCATCTTGGAGATCAT 151947 Query 110916 TGCACA-CTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTA 110974 ||||| ||| |||| ||| | || || || ||||| || |||| | ||| | Sbjct 151948 GGCACAGGTCT-TGAGAGTATCGTAGATTCCCTCAATACTGTCGTCCTTCATATCAACCA 152006 Query 110975 GAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCAT 111034 |||||||| |||| || || |||| || || || |||||||| || || | |||| Sbjct 152007 AGAAGCAAGATGACAATTGGGGCTGAGGGGTGCCGGCGTTGAAGAGCGTGGGAGAAGCAT 152066 Query 111035 GAATGAACAGACCTTG--GGACATCTTGTTGTATGTGTC 111071 | ||| ||| ||| ||||||| ||||||||| || Sbjct 152067 GTGTGA--AGAATTTGCTGGACATCAGGTTGTATGTCTC 152103 >seq136 Length=610640 Score = 104 bits (114), Expect = 3e-17 Identities = 250/373 (67%), Gaps = 18/373 (5%) Strand=Plus/Plus Query 11592 GAAACCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGG 11651 ||||||||||||||| ||||||| |||||| | || ||| |||||||||||| Sbjct 594617 GAAACCGTCCATTTCAGTGAGAATCTGGTTCAGAGTTGCTTCCCGCTCATCGTTGCCAC- 594675 Query 11652 CATACCACCTGCCGAACGCTTCTTACCGACA-------GCGTCAATCTCATCGATGAATA 11704 || | | || |||| | | | | | || |||||||||||||| ||||| | Sbjct 594676 CAAATCCCCGGCCGCTCTCCTGTCGCGCACGTCCAATTGCGTCAATCTCATCAATGAAGA 594735 Query 11705 CGATACACGGTTGGTTGGCACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAA 11764 ||| || || ||| |||| | | |||| | || | ||||| | || | Sbjct 594736 TGATGCAAGGGGCGTTCTTACGTCCTTCGGCGAACAAATCTCTCACACGTGAAGGACCGA 594795 Query 11765 CACCTACGAACATCTCAACGAAGTTTG--CGGCAGAACACTGAATGAAGGGAACATTAGA 11822 |||| || ||||| |||||||| | | | || | ||||||| ||| || || ||| Sbjct 594796 CACCGACAAACATTTCAACGAACTCAGAACCGCTCA-CACTGAA-GAATGGTACTCCAGA 594853 Query 11823 CTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAG 11882 ||| || || |||| || || | |||||||| |||||||| | |||||| | | Sbjct 594854 CTCGCCGGCCGTGGCCTTGGCAAGCAATGTCTTACCGGTACCAGGAGGACCAGCTAAGAT 594913 Query 11883 GGCGCCACGGGGGATCTTGGCACC---ACTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAA 11939 || || || |||||||||||||| || | || | ||| |||| ||| ||||| Sbjct 594914 AGCACCTCGAGGGATCTTGGCACCTAGCTTTTCGAATT---TCTCGGGCTGCTTCAGGAA 594970 Query 11940 GTCCACAATCTCC 11952 | ||||| |||| Sbjct 594971 GCTCACAAACTCC 594983 >seq546 Length=689558 Score = 82.4 bits (90), Expect = 9e-11 Identities = 205/303 (68%), Gaps = 9/303 (3%) Strand=Plus/Plus Query 119495 GGCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCC 119554 |||||| || ||||| || ||||| |||||||||||||| || |||| || || Sbjct 566929 GGCAAAGTCAGTGTGAAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACC 566988 Query 119555 AGGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGAT 119614 |||||||| || | ||||| ||||| ||||| | || ||| |||||||| Sbjct 566989 GGGCATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGCACCACTGAAGAAGAT 567048 Query 119615 GCCCTCCACACAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAG-ACTTGTC---GA 119670 ||||| ||| |||||||| | ||||||| || ||| | ||| ||| || || Sbjct 567049 ACCCTCAACAGCAGCGAAAGCAACGAGACGCTGGGC-AAATGAGGAGTCCTTATCCTGGA 567107 Query 119671 ACCACTTGAGAGCCCAGTTGGCCTTACGCTC-TATGCAGGGGACAGTTTGGATGGC-TTC 119728 ||| || ||||||| |||||| | || |||||||||| || | ||||| || Sbjct 567108 TCCATCGGATGGCCCAGTCGGCCTT-CTTTCGGATGCAGGGGATGGTCTCAATGGCGTTA 567166 Query 119729 GAAAAGTTGCTTCTTTTCAGCACCATCCTTAATATATTTATCAATGAGTTTAGAGTAGGT 119788 | | || | ||| | || ||||| || || | |||||||| |||||||| Sbjct 567167 AAGAGGTAGGTTC-GCTGGGCGGGCTCCTTGATGTAGGTGTCAATGAGCAGGGAGTAGGT 567225 Query 119789 CTC 119791 ||| Sbjct 567226 CTC 567228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588964949337800