Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702655
.1_202016-08-10] 1,501 sequences; 51,609,830 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq832 244 1e-59
seq136 104 3e-17
seq546 82.4 9e-11
>seq832
Length=168102
Score = 244 bits (270), Expect = 1e-59
Identities = 1026/1599 (64%), Gaps = 57/1599 (4%)
Strand=Plus/Plus
Query 109500 GTTCATCGACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGTCGATGATACA 109559
||||| ||||| |||||||| ||||| ||| |||||||| ||||| | | ||
Sbjct 150535 GTTCAGTGACTGGGACTGATCAATGAAGGCACCTCGATCAGCAGCCATCTGAACGA---- 150590
Query 109560 CTTTTGGCTAA----TTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGT 109615
||| ||| | | ||||| || ||||| |||| | ||||| ||| | || ||||
Sbjct 150591 CTTGGCGCTGAGAGATCTCCCAAACGGTCTTATACAGAGCCTTGACATCGGCAGGGATGT 150650
Query 109616 CCACGATGTTTTGAATAGAGCCAC---CAGCCTTCACCATGAGATCCTTCATCTCTTTCG 109672
||||| ||||| || ||| |||| | | || | | |||||| | | |
Sbjct 150651 TGGGAATGTTCTGAATGGAACCATTCTCAGCAATGA---TGCGGTTCTTCATAGCATCGG 150707
Query 109673 ACCAGAGACCGACCTTTTTGAGATCGTCAACAAGATGCTTG---TTGACCACGACAAATT 109729
|||| ||||| | | | || | ||| || || | ||||| || || |
Sbjct 150708 ACCACAGACCCA---TGTCGACAAGGTCCTTGAGCAGCCAGGGGTTGACAACCTGGAACT 150764
Query 109730 CACCAGCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGT 109789
||||||| || ||||| |||||||||| | |||||||| ||||| ||||| ||||
Sbjct 150765 CACCAGCGAGAACACGTCGTTGGTAGATGTTGGAGGTGTAGGGCTCGAAGCACTCGTTGT 150824
Query 109790 TGCCTAGGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGA 109849
|||| || || || | || || || ||||| ||||| | ||| |||||||| ||||
Sbjct 150825 TGCCCAGAATCTGGGAGGTACTGGCAGTAGGCATAGGAGCAAGGAGCAGACTGTTACGGA 150884
Query 109850 GACCCTTCGTCTTTACCCGCTCACGCATTGCGTCCCAATCATAACGACCACTAAATTTAG 109909
|| | ||||| || ||| || | | ||||| || | | || |
Sbjct 150885 TGCCGTGTGTCTTGACTTCCTCTCGAAGAGTCTCCCAGTCCCAGAGGTCAGAG------G 150938
Query 109910 TCTCACCATCCCACATATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAAC 109969
|| | | |||||| || || || | |||||||| || || ||||| |||||
Sbjct 150939 GCTTGACGTTCCACATGTCGAACTGGAGGATACCCTCAGAGGCGGGGGAACCTTTGAAGG 150998
Query 109970 TCTCGTACGACCCCTCAACCTCGGCCAACTCGGATGAAGCCTCT-AGTGCCGCATGATAC 110028
| ||| | ||||| ||| |||| || | | | || | | || || || || ||
Sbjct 150999 TGGAGTAGGGACCCTCCTCCTTAGCCAGCT-GCACGGAGGCAGTGAGGGCAGCGTGGTAA 151057
Query 110029 ATAGTCTCAAAAATATGAGCATTCATGAGG---CGAGACTCTTCACAGTCGAAGGGAAGA 110085
|| ||||| || || || || |||| |||| ||| | |||||||| |
Sbjct 151058 ATGGTCTCGAAGATCTGC---TTGTTGAGCTCACGAGCCTCGGGTGACTCGAAGGGCATG 151114
Query 110086 CCACAAAG-AATAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTT 110144
| || || || || |||| || || ||||||||||| ||||||||||| || ||
Sbjct 151115 CG-CAGAGCAAGGAAAGCATCGGCAAGGCCCTGAACACCAAGACCAATGGGTCGGTGGCG 151173
Query 110145 CATGTTAGAGCGTCGAGCAGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAG 110204
||||||| | ||||| | || ||||| ||| ||||||| | || ||
Sbjct 151174 CATGTTACTGTTGCGAGCCTCCTGGACAGGGTAGTGGTTCACATCGATGATCTTGTTCAG 151233
Query 110205 ATTCTTCGTCACAGTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTC 110264
|| | ||| || ||| | || | || | | | ||| | | | ||
Sbjct 151234 GTTGCGAATAACAACCTGACTGACCTTGTGCAACTTCTTGAAGTCGTA-GCAAGCCTCAT 151292
Query 110265 CTTA-TTGACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTT 110323
| || |||| | ||| ||||| | ||| ||||| ||||| |||| ||||||
Sbjct 151293 CGTAGTTGATGAAAGAGGGCAGAGCCAGAGAGGCAAGGTTGCAGACAGCGACCTCGTCAG 151352
Query 110324 TGTCGGTGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCT 110383
| | ||| || | |||||| || |||| |||||| || ||| ||| | |||||
Sbjct 151353 GGGCACAGTACTCAATAATTTCAGTGCACAGGTTGGAGCTTCGGATGGTACCGAGGTTCT 151412
Query 110384 TCTGATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCG 110443
| || || ||| |||||| |||||||| ||||||||| ||||| | || || || |
Sbjct 151413 TTTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCAG 151472
Query 110444 TCTGTGACTTGAGAATGGCCTTCCATACATCGGCGGCGGGGACAGT--TGCGTTAGCGAG 110501
|||| | || |||||||| | ||| | | || || ||| |||| | |
Sbjct 151473 TCTGGGCCTCAAGAATGGCGTACCAAAGTTTCTGAGCCTTGATAGTCTTGCG--ACCCTT 151530
Query 110502 ACCTTCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAG 110561
|| |||| ||||||||| ||||| |||| || |||| |||||| || | ||
Sbjct 151531 GCCCTCCTTCTCGTACTTTTCGTACAGAGCCTCGAACTCCTCTCCGTAGCAGTCGGCGAG 151590
Query 110562 ACCCTTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCAT 110621
|| || || ||| || | || | ||| | || || ||||| | ||||||
Sbjct 151591 GCCAGGGCACTCGTTGGGGCACATCAGCGTCCAGTCGCCGTTCTTTTCAACACGCTTCAT 151650
Query 110622 GAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACC 110681
||| || ||||| ||||| | || ||||||||||||| ||| |||| || | |||
Sbjct 151651 GAAAAGATCAGGGATCCAAAGGGCGAGGAAAAGGTCACGGGCACGGACCTCCTCTTTACC 151710
Query 110682 TTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAG-- 110739
||||| || || || | || || | || ||| |||||||| || ||||| |||
Sbjct 151711 GTGGTTCTTACGGAGATCAAGGAACTCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGAT 151770
Query 110740 ----ACAGCGATGGATCCCTTACGACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATT 110795
| ||| || || ||| | | || |||||| |||||||| || ||| ||
Sbjct 151771 GGCAAAAGCACCGGGTCGCTT--GTTG-CCACCCTGGTCGACATAGCGAGCAGTGTTGTT 151827
Query 110796 GAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGA 110855
|||||| | |||||||||| || || | ||| ||| || ||||| || |||
Sbjct 151828 GAAGACACGAAGCATAGGAACAACACCGTTCGATGTACCGTTGGTACCGGCGATGTAGGA 151887
Query 110856 CTTATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTG 110915
| | ||||| || ||| | | || |||||||||||| ||| ||| ||
Sbjct 151888 GCCAGTAGCACGGATACGGTGCACGTTCAGACCAATACCACCAGCCATCTTGGAGATCAT 151947
Query 110916 TGCACA-CTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTA 110974
||||| ||| |||| ||| | || || || ||||| || |||| | ||| |
Sbjct 151948 GGCACAGGTCT-TGAGAGTATCGTAGATTCCCTCAATACTGTCGTCCTTCATATCAACCA 152006
Query 110975 GAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCAT 111034
|||||||| |||| || || |||| || || || |||||||| || || | ||||
Sbjct 152007 AGAAGCAAGATGACAATTGGGGCTGAGGGGTGCCGGCGTTGAAGAGCGTGGGAGAAGCAT 152066
Query 111035 GAATGAACAGACCTTG--GGACATCTTGTTGTATGTGTC 111071
| ||| ||| ||| ||||||| ||||||||| ||
Sbjct 152067 GTGTGA--AGAATTTGCTGGACATCAGGTTGTATGTCTC 152103
>seq136
Length=610640
Score = 104 bits (114), Expect = 3e-17
Identities = 250/373 (67%), Gaps = 18/373 (5%)
Strand=Plus/Plus
Query 11592 GAAACCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGG 11651
||||||||||||||| ||||||| |||||| | || ||| ||||||||||||
Sbjct 594617 GAAACCGTCCATTTCAGTGAGAATCTGGTTCAGAGTTGCTTCCCGCTCATCGTTGCCAC- 594675
Query 11652 CATACCACCTGCCGAACGCTTCTTACCGACA-------GCGTCAATCTCATCGATGAATA 11704
|| | | || |||| | | | | | || |||||||||||||| ||||| |
Sbjct 594676 CAAATCCCCGGCCGCTCTCCTGTCGCGCACGTCCAATTGCGTCAATCTCATCAATGAAGA 594735
Query 11705 CGATACACGGTTGGTTGGCACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAA 11764
||| || || ||| |||| | | |||| | || | ||||| | || |
Sbjct 594736 TGATGCAAGGGGCGTTCTTACGTCCTTCGGCGAACAAATCTCTCACACGTGAAGGACCGA 594795
Query 11765 CACCTACGAACATCTCAACGAAGTTTG--CGGCAGAACACTGAATGAAGGGAACATTAGA 11822
|||| || ||||| |||||||| | | | || | ||||||| ||| || || |||
Sbjct 594796 CACCGACAAACATTTCAACGAACTCAGAACCGCTCA-CACTGAA-GAATGGTACTCCAGA 594853
Query 11823 CTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAG 11882
||| || || |||| || || | |||||||| |||||||| | |||||| | |
Sbjct 594854 CTCGCCGGCCGTGGCCTTGGCAAGCAATGTCTTACCGGTACCAGGAGGACCAGCTAAGAT 594913
Query 11883 GGCGCCACGGGGGATCTTGGCACC---ACTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAA 11939
|| || || |||||||||||||| || | || | ||| |||| ||| |||||
Sbjct 594914 AGCACCTCGAGGGATCTTGGCACCTAGCTTTTCGAATT---TCTCGGGCTGCTTCAGGAA 594970
Query 11940 GTCCACAATCTCC 11952
| ||||| ||||
Sbjct 594971 GCTCACAAACTCC 594983
>seq546
Length=689558
Score = 82.4 bits (90), Expect = 9e-11
Identities = 205/303 (68%), Gaps = 9/303 (3%)
Strand=Plus/Plus
Query 119495 GGCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCC 119554
|||||| || ||||| || ||||| |||||||||||||| || |||| || ||
Sbjct 566929 GGCAAAGTCAGTGTGAAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACC 566988
Query 119555 AGGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGAT 119614
|||||||| || | ||||| ||||| ||||| | || ||| ||||||||
Sbjct 566989 GGGCATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGCACCACTGAAGAAGAT 567048
Query 119615 GCCCTCCACACAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAG-ACTTGTC---GA 119670
||||| ||| |||||||| | ||||||| || ||| | ||| ||| || ||
Sbjct 567049 ACCCTCAACAGCAGCGAAAGCAACGAGACGCTGGGC-AAATGAGGAGTCCTTATCCTGGA 567107
Query 119671 ACCACTTGAGAGCCCAGTTGGCCTTACGCTC-TATGCAGGGGACAGTTTGGATGGC-TTC 119728
||| || ||||||| |||||| | || |||||||||| || | ||||| ||
Sbjct 567108 TCCATCGGATGGCCCAGTCGGCCTT-CTTTCGGATGCAGGGGATGGTCTCAATGGCGTTA 567166
Query 119729 GAAAAGTTGCTTCTTTTCAGCACCATCCTTAATATATTTATCAATGAGTTTAGAGTAGGT 119788
| | || | ||| | || ||||| || || | |||||||| ||||||||
Sbjct 567167 AAGAGGTAGGTTC-GCTGGGCGGGCTCCTTGATGTAGGTGTCAATGAGCAGGGAGTAGGT 567225
Query 119789 CTC 119791
|||
Sbjct 567226 CTC 567228
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588964949337800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |