Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702655 .1_202016-08-10] 1,501 sequences; 51,609,830 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq324 96.9 3e-15 seq58 86.0 5e-12 >seq324 Length=941764 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || || ||| ||| || ||||| ||||||||||| ||| | || |||| || | |||| Sbjct 282715 TGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGAGAGAGTGCGGCCGTCCTCAAGCTGC 282656 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || ||||| || |||| || || || || | ||| | |||||||||||| |||||| Sbjct 282655 TTGCCGGCGAAAATCAAGCGTTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGAATCTTG 282596 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 || ||| | | || || || | ||| ||||| | || || || || || ||| Sbjct 282595 GACTTGACATTGTCGATAGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCTTGCCGGTC 282536 Query 48744 AAAGTTTTTACAAAAATCTGCAT 48766 || || || || || |||||||| Sbjct 282535 AAGGTCTTGACGAAGATCTGCAT 282513 >seq58 Length=488489 Score = 86.0 bits (94), Expect = 5e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 48579 TTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATC 48638 || || || ||||| || || ||| |||| | || || | ||||||||| || || ||| Sbjct 8744 TTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCGAGCTGCTTACCAGCGAAGATC 8803 Query 48639 AGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 ||||||||||| |||| ||||| |||||||||||| Sbjct 8804 AGTCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTC 8838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380930631341823