Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702655 .1_202016-08-10] 1,501 sequences; 51,609,830 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq832 349 6e-91 seq546 199 7e-46 >seq832 Length=168102 Score = 349 bits (386), Expect = 6e-91 Identities = 1154/1767 (65%), Gaps = 102/1767 (6%) Strand=Plus/Plus Query 212553 ACCGTAAACTGTACTGGATCAGCAGCAGCCTTGGTGCGTAGATAGTACATGCCGGTCTTT 212612 || || ||||| | ||| |||||||||||| || || || ||||||||||| ||||| Sbjct 150407 ACAGTGAACTGAATAGGAGCAGCAGCAGCCTGTGTACGAAGGTAGTACATGCCAGTCTTG 150466 Query 212613 AGGCC---CTTGCCCCAGCCGTGCAT-GTGCATTGCTGTGAGTTTCTTCAGCTTAATATT 212668 ||||| ||| |||||| |||| |||||| |||| |||| | || | Sbjct 150467 AGGCCAAGCTT---CCAGCC-TGCAAAGTGCATACTGGTGA---TCTTGCCC---ATCGT 150516 Query 212669 CTGGTCATCCTCGTGGCCCAGATGTAGGTTCAGGGACTGACTCTGGTCTATGAATGGGGC 212728 |||| | | |||| | |||||| ||||| ||| || ||||| | | Sbjct 150517 GGGGTCTTTCATGTGG---------ATGTTCAGTGACTGGGACTGATCAATGAAGGCACC 150567 Query 212729 CCTGTCAGCGGCCATGTCTATGATATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGAT 212788 | ||||| ||||| | | || | | ||| |||| |||||| |||||||| | | Sbjct 150568 TCGATCAGCAGCCATCTGAACGACTTGGCGCTGAGAGATCTCCCAAACGGTCTTATACAG 150627 Query 212789 TTCTTTGAGGTCCTCTGGGAAGCCGGGGATGTTCTGCACAGACCCCCTGTGTATGGTCAG 212848 | |||| || | |||| | ||| |||||||| | || || || |||| Sbjct 150628 AGCCTTGACATCGGCAGGGATGTTGGGAATGTTCTGAATGGAACC-------ATTCTCAG 150680 Query 212849 C--TGCAGGCG------CATGTCCTCGTTCCAGAGGCCCCTGGTCTCCAGGCACTTGACC 212900 | || | ||| ||| | ||| ||| || ||| || | ||| ||||| | Sbjct 150681 CAATG-ATGCGGTTCTTCATAGCATCGGACCACAGACCCATGTCGACAAGGTCCTTGAGC 150739 Query 212901 AGGTGAGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAA 212960 || |||||||| | |||||| ||||| | ||| || | | ||||| | ||| || Sbjct 150740 AGCCAGGGGTTGACAACCTGGAACTCACCAGCGAGAACACGTCGTTGGTAGATGTTGGAG 150799 Query 212961 GTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATG 213020 ||||||||||||| || ||||||||| ||||||||||| | || ||||| || ||||| Sbjct 150800 GTGTAGGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGGGAGGTACTGGCAGTAGGCATA 150859 Query 213021 GGAGCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGC---CGAAGC-TC 213076 ||||| | || |||||||| | | ||||| | | ||| | ||||| || Sbjct 150860 GGAGCAAGGAGCAGACTGTTACGGATGCCGTGT--GTCT-TGACTTCCTCTCGAAGAGTC 150916 Query 213077 TGCCCAGTCCCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAA 213136 | |||||||||| | |||| | ||| |||||||||||||| ||||| | Sbjct 150917 T-CCCAGTCCCAGAGGTCAGAGGG---------CTTGACGTTCCACATGTCGAACTGGAG 150966 Query 213137 GATGCCTTTGCTCA----CGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGG 213192 ||| || |||| ||||| || | | | | ||||||||| || | |||||| | Sbjct 150967 GATACC----CTCAGAGGCGGGGGAACCTTTGAAGGTGGAGTAGGGACCCTCCTCCTTAG 151022 Query 213193 CCAGCTCGCA-GGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTG 213251 |||||| ||| ||| || |||||||||| ||| ||||| || || |||| | ||||| Sbjct 151023 CCAGCT-GCACGGAGGCAGTGAGGGCAGCGTGGTAAATGGTCTCGAAGATCTGCTTGTTG 151081 Query 213252 AGCTTCTTGGCCTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGC 213311 |||| ||||| || ||| ||||||||| || |||| |||| || || Sbjct 151082 AGCTCACGAGCCTCGGGTGACTCGAAGGGCATGCGCAGAGCAAGGAAAGCATCGGCAAGG 151141 Query 213312 CCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTG-GAGCACTCCTCCAA 213370 ||||| || || | || ||||||| ||| | || |||| ||| |||| ||||| | Sbjct 151142 CCCTGAACACCAAGACCAATGGGTCGGTGGCGCATGTTACTGTTGCGAGC-CTCCTGGAC 151200 Query 213371 GGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATG 213430 ||||| ||| |||||||||||||| |||||||| | | || | |||| | Sbjct 151201 AGGGTAGTGGTTCACATCGATGATCTTGTTCAGGTTGCGAATAACAACCTGACTGACCTT 151260 Query 213431 GGCCAGGTACTCGTGATTGAACACGTAGC------CCCCGTCCTGCACAAACTCAGGCAG 213484 | || || | ||||| |||||| | ||| | | || ||||| Sbjct 151261 GTGCA---AC---TTCTTGAAGTCGTAGCAAGCCTCATCGTAGTTGATGAAAGAGGGCAG 151314 Query 213485 GGCGATGCTGGCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTC 213544 || | ||| |||||||| || || ||||| | || | | |||||| || || || Sbjct 151315 AGCCAGAGAGGCAAGGTTGCAGACAGCGACCTCGTCAGGGGCACAGTACTCAATAATTTC 151374 Query 213545 GGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGC 213604 |||||||||||| || ||||||||| || ||||||| ||| ||| ||||| | || Sbjct 151375 AGTGCACAGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGG-TTGCTCTTGCGGTTGC 151433 Query 213605 A-GAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGC 213663 | | |||||||||||||||| | ||| |||||||| ||||| | | || || | Sbjct 151434 AGGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCCTCAAGAATGGCGT 151493 Query 213664 TCCAGAGGTACCTGGCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGCCTCGTACTGTT 213723 ||| || | | ||||||| | | ||| | | | | |||||||| || Sbjct 151494 ACCAAAGTTTCTGAGCCTTGA-TAGTCTTGCGACCCTTGCCCTCCT--TCTCGTACTTTT 151550 Query 213724 CGTAGAGCTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGACAGGATGCGGGAC 213783 |||| || | | ||| || | || || | | || || || || ||| | Sbjct 151551 CGTACAGAGCCTCGAACTCCTCTCCGTAGCAGTCGGCGAGGCCAGGGCACTCGTTGGGGC 151610 Query 213784 ACATGAGGCTCCAGTCCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACA 213843 |||| || ||||||| |||| | | || | || |||||| || || |||| ||| | Sbjct 151611 ACATCAGCGTCCAGTCGCCGTTCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCAAA 151670 Query 213844 GCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTA 213903 | ||| ||| ||||| | || | ||| || || ||| || || ||||| | Sbjct 151671 GGGCGAGGAAAAGGTCACGGGCACGGACCTCCTCTTTACCGTGGTTCTTACGGAGATCAA 151730 Query 213904 GAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCG---GCC 213960 | || || |||| || | |||||| ||||| | |||||||||||| || || | || Sbjct 151731 GGAACTCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCT 151790 Query 213961 TCTTGCCGCCCTGGTCCACCAGCCTGGCCACCA----TGTTGAAGATGCGCAGGACGGGT 214016 | ||||| |||||||| | | | || | || ||||||||| || || | || Sbjct 151791 TGTTGCCACCCTGGTCGA----CATAGCGAGCAGTGTTGTTGAAGACACGAAGCATAGGA 151846 Query 214017 ACCAGCCCGTTGGACTGT-CCGTTGGTTCCCGCTATATACGAGCCGGAGGCCC--TCAGG 214073 || | ||||| || ||| |||||||| || || || || ||||| | || | | | Sbjct 151847 ACAACACCGTTCGA-TGTACCGTTGGTACCGGCGATGTAGGAGCCAGTAGCACGGATACG 151905 Query 214074 TTGCTCATGGAGAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACA 214133 ||| | | ||| || || ||||| || ||||||||||||||| ||| | | | | Sbjct 151906 GTGCACGTTCAGA--CCAATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGA 151963 Query 214134 GTCTCCATGATGCCGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGC 214193 || || ||| || | || ||||| || | | | | ||||||||| || | Sbjct 151964 GTATCGTAGATTCCCTCAATACTGTCGTCCTTCATATCAACCAAGAAGCAAGATGACAAT 152023 Query 214194 TGGGGCCTGGACGAGCCAGAGTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTTGTTA 214253 |||||| | | ||| | |||||| |||||||| ||||| | | || ||| | Sbjct 152024 TGGGGCTGAGGGGTGCCGGCGTTGAAGAGCGTGGGAGAAGCATGTGTGAAGAATTTGCTG 152083 Query 214254 GAGAGGAGCCTGTAGGTCTCCAGGACT 214280 || | || |||| ||||||| |||| Sbjct 152084 GACATCAGGTTGTATGTCTCCAAGACT 152110 >seq546 Length=689558 Score = 199 bits (220), Expect = 7e-46 Identities = 493/738 (67%), Gaps = 29/738 (4%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||||||||| | || | ||||| |||||||| ||||| || | | ||||||||||| Sbjct 566638 CTGGTAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTCTC 566697 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAG-GCCCATCTGTTCCAGCA 47957 ||||||| ||||||||||| | || || ||| | || ||| | | | || | Sbjct 566698 CATGAAGTCGAAGGGGTTGGTGGCCTTGTAAACCT-TCTCGTTGCCAAGCGCGACAAGGA 566756 Query 47958 GGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGG 48017 | |||| |||||| |||| ||||| | ||||||| ||||||||| | |||| Sbjct 566757 GACGATCAGCGACGAACTCAATGTACTGCTTCATGAGGTCAGAGTTCATGCCGAGAAGGG 566816 Query 48018 ACACGGGCAA-AGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATC 48076 ||| || || ||||| ||||| ||||||| ||| ||| ||||| || | || Sbjct 566817 -CACAGGGAAGAGCCTCAGTGAGGAACTCCTGCTCAATCGTGACGGCATCAGTAATGATA 566875 Query 48077 TGCTTAACGCGGGAC-TCTGAGGGTTTGTTGCGCAGGTGC-TTG------GCATAGAGCA 48128 | || || | |||| ||| || ||| | | ||| | | ||| | Sbjct 566876 TCCT------GGATCATCTGC----TTGCTG-GCACGACCCTTGAGGTGAGAGTGGAGGA 566924 Query 48129 TGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGA 48188 |||||||||||| |||| | || || || || ||||||| ||||||||||| | Sbjct 566925 GGCAGGCAAAGTCAGTGTGAAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCA 566984 Query 48189 GACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGA 48248 |||| ||||||| || | || ||||||||||| || | ||||| | ||| ||||| Sbjct 566985 GACCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGCACCACTGAAGA 567044 Query 48249 AGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTG 48308 |||| ||||| || || ||||| || ||| | || | || || | || ||| || Sbjct 567045 AGATACCCTCAACAGCAGCGAAAGCAACGAGACGCTGGGCAAATGAGGAGTCCTTATCCT 567104 Query 48309 AGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCC 48368 |||||| | |||||||| |||||||| |||||| || || ||||| ||||| Sbjct 567105 GGATCCATCGGATGGCCCAGTCGGCCTTCTTTCGGATGCAGGGGATGGTCTCAATGGCGT 567164 Query 48369 GGAAGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGT---AGTGAGCAGCTTTGCGT 48425 ||||| | | | || | | ||| | ||||| | ||||||| | || Sbjct 567165 TAAAGAGGTAGGTTCGCTGGGCGGGCTCCTTGATGTAGGTGTCAATGAGCAG---GGAGT 567221 Query 48426 ACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAA 48485 | |||| ||||| | ||||| || ||||||||| ||||||||| | ||||| Sbjct 567222 AGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAACGAGCCTCGG 567281 Query 48486 ACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAG 48545 | ||| || || ||||| ||| | || ||||| ||||| || ||||| || | Sbjct 567282 GGATCTGGACCTCGCCACTGAATCGCTCGACGAGGTTCTCGTTGACAATACCATCAGAGG 567341 Query 48546 CAGCAAAGAAGGCAAGGA 48563 |||| || || ||||||| Sbjct 567342 CAGCGAAAAAAGCAAGGA 567359 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931515322115840