Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702655
.1_202016-08-10] 1,501 sequences; 51,609,830 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq832 251 1e-61
seq546 181 2e-40
>seq832
Length=168102
Score = 251 bits (278), Expect = 1e-61
Identities = 809/1230 (66%), Gaps = 59/1230 (5%)
Strand=Plus/Plus
Query 221417 GTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG-GCCTCGGG 221475
|| |||||||||||||| |||||||| |||||| ||||||||| ||| | ||||||||
Sbjct 151040 GTGAGGGCAGCGTGGTAAATGGTCTCGAAGATCTGCTTGTTGAG-CTCACGAGCCTCGGG 151098
Query 221476 AGAAGTGAAGGGCATACGCAGCATCT--GAAAGACGTCGGCCAGTCCCTGTACTCCGATA 221533
|| ||||||||| ||||| | | ||||| | ||||| || ||||| || || | |
Sbjct 151099 TGACTCGAAGGGCATGCGCAG-AGCAAGGAAAG-CATCGGCAAGGCCCTGAACACCAAGA 151156
Query 221534 CCGATGGGCCTGTGTCTCCTGTTG--GAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGA 221591
|| ||||| | ||| | | |||| | ||| | || |||| || || || ||| |
Sbjct 151157 CCAATGGGTCGGTGGCGCATGTTACTGTTGCGAGC-CTCCTGG-ACAGGGTAGTGGTTCA 151214
Query 221592 CGTCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGT 221651
| ||||| | ||||| ||||| || | | || | | |||| | || ||||| |
Sbjct 151215 CATCGATGATCTTGTTCAGGTTGCGAATAACAACCTGACTGACCTTGTGCAACTTCTTGA 151274
Query 221652 GATTGAACACCAACTCGCCGC--CGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAAC 221709
| | | ||| ||| | ||| || || | |||| | || || |
Sbjct 151275 AGTCGTAG--CAA---GCCTCATCGTAGTTGATG---------AAAGAGGGCAGAGCCAG 151320
Query 221710 GCTGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACA 221769
||| ||||| || || || |||||||| | |||| || || || || ||
Sbjct 151321 AGAGGCAAGGTTGCAGACAGCGACCTCGTCAGGGGCACAGTACTCAATAATTTCAGTGCA 151380
Query 221770 GAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTC 221829
|||||| || |||||| || |||| || || || |||||| ||| || ||
Sbjct 151381 CAGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGGCATC 151440
Query 221830 CTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAG 221889
|||||||||||| || || || ||||| ||| ||| | ||||| || ||| ||
Sbjct 151441 CTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCCTCAAGAATGGCGTACCAAAG 151500
Query 221890 TTCTCTG-GCGCTCACCGTCCT------CTTGACTGCACCCTCGGTCTTTTCATACCCGG 221942
|| |||| || | | ||| | |||| | | |||| |||||| |||
Sbjct 151501 TT-TCTGAGCCTTGATAGTCTTGCGACCCTTGCCCTCCTTCTCGTACTTTTCGTAC---- 151555
Query 221943 TATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGAC 222002
||||| | | |||| || ||||| ||| | ||||| || ||| | ||| |
Sbjct 151556 ---AGAGCCT--CGAACTCCTCTCCGTAGCAGTCGGCGAGGCCAGGGCACTCGTTGGGGC 151610
Query 222003 ACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACA 222062
||||||| |||||| ||| | || || | || |||||| || || |||||||| |
Sbjct 151611 ACATCAGCGTCCAGTCGCCGTTCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCAAA 151670
Query 222063 GCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCA 222122
| || | || || || | || || |||||| |||| ||| || | ||||| |
Sbjct 151671 GGGCGAGGAAAAGGTCACGGGCACGGACCTCCTCTTTACCGTGGTTCTTACGGAGATCAA 151730
Query 222123 AAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCT 222182
||||| || | |||| |||||| ||||| || |||| ||| | ||| ||||||||||
Sbjct 151731 GGAACTCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCT 151790
Query 222183 TGTTGCCACCCTGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACC 222241
||||||||||||| || | ||| ||| | |||||||| ||||| | || ||
Sbjct 151791 TGTTGCCACCCTGGTCGA-CATAGCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACA 151849
Query 222242 AGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTG 222301
| ||||| ||| ||||||||| || ||||| | || || | || ||| |
Sbjct 151850 ACACCGTTCGATGTACCGTTGGTACCGGCGATGTAGGAGCCAGTAGCAC---GGATACGG 151906
Query 222302 -GCA--GACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTG 222358
||| || || |||||||| || || ||||||||||| ||| ||||||||||
Sbjct 151907 TGCACGTTCAGACCAATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTA 151966
Query 222359 TCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGA 222418
|| ||| ||||| ||| ||| ||||| | | | || || ||||| |||| ||
Sbjct 151967 TCGTAGATTCCCTCAATACTGTCGTCCTTCATATCAACCAAGAAGCAAGATGACAATTGG 152026
Query 222419 GATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGAC 222478
| | | || | |||||| || ||||||||| || ||||| ||| | || |||
Sbjct 152027 GGCTGAGGGGTGCCGGCGTTGAAGAGCGTGGGAGAAGCATGTGTGAAGAATTTGCTGGAC 152086
Query 222479 ATCAGATCGTACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAAT--CTGCATGGCGC 222536
||||| | ||| ||||| | ||||| |||| | || || ||| | || | | |
Sbjct 152087 ATCAGGTTGTATGTCTCCAAGACTCGCTCGATATCATCACCCCAAATACCAACA-GACAC 152145
Query 222537 ATCTCATGTACATGTACTGGGGCCTCTCCACA--GGACCCTTGGAGCTGGAGAGCAGGTA 222594
| | |||| ||||| ||| || | ||| ||| || | | || ||| |||||
Sbjct 152146 A-CGCATGATCATGTGCTGAGGGCGCTCGACAATCTTACCGTCAATCT--TGAGGAGGTA 152202
Query 222595 CGATTTTTCCAGAGTCTTGAACCCAAAGTA 222624
||| |||| ||||||||| ||||||||
Sbjct 152203 TGATCGCTCCAAAGTCTTGAAGCCAAAGTA 152232
Score = 87.8 bits (96), Expect = 3e-12
Identities = 128/181 (71%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 221116 GTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGG 221175
||| || || ||||| || || | ||| || | | ||||| | ||| || ||| | ||
Sbjct 150748 GTTGACAACCTGGAACTCACCAGCGAGAACACGTCGTTGGTAGATGTTGGAGGTGTAGGG 150807
Query 221176 TTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCAC 221235
|||| || ||||||||||||||| ||||| | || ||||| || ||||| || || |
Sbjct 150808 CTCGAAGCACTCGTTGTTGCCCAGAATCTGGGAGGTACTGGCAGTAGGCATAGGAGCAAG 150867
Query 221236 CAGCAGACTGTTGCGCAGTCCGAATCTATTGATGGACTTTCTCAGCGTGTTCCAGTCACA 221295
||||||||||| || | ||| | | |||| || || || || | |||||| ||
Sbjct 150868 GAGCAGACTGTTACGGATGCCGTGTGTCTTGACTTCCTCTCGAAGAGTCTCCCAGTCCCA 150927
Query 221296 G 221296
|
Sbjct 150928 G 150928
>seq546
Length=689558
Score = 181 bits (200), Expect = 2e-40
Identities = 392/584 (67%), Gaps = 7/584 (1%)
Strand=Plus/Minus
Query 25463 TAACACACAAAGATATAT--GGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGC 25520
||||| || | |||| || || | ||||||||||||||| | || |||||| ||
Sbjct 567499 TAACAGACCATGATAGATTTGGCAAATGTACAAGAAGGCTGAGGCTTCCTTCTGGACTGC 567440
Query 25521 CGAAGAGATTGATCTGGCCAAGGACATGGACGGCTGGTAC----GCTCTATCCAAAGACG 25576
|| ||||||||||| ||||||| | | | |||| || || || | || |
Sbjct 567439 TGAGGAGATTGATCTTTCCAAGGATCTCCATGACTGGAACAACCGC-CTGACTGCCGATG 567381
Query 25577 AGCAGCATTTTCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACG 25636
||||| || || || | | || || || || |||||||||||||| || ||||
Sbjct 567380 AGCAGTTCTTCGTCTCTCACATCCTTGCTTTTTTCGCTGCCTCTGATGGTATTGTCAACG 567321
Query 25637 AGAATCTGTGCGAGAGATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACG 25696
|||| || |||| |||||| | || || ||| | ||||| || |||||||
Sbjct 567320 AGAACCTCGTCGAGCGATTCAGTGGCGAGGTCCAGATCCCCGAGGCTCGTTGCTTCTACG 567261
Query 25697 GTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGT 25756
| |||||||| || || || | ||||| ||| || || ||| | || |
Sbjct 567260 GCTTCCAGATCATGATGGAGAACATCCACTCCGAGACCTACTCCCTGCTCATTGACACCT 567201
Query 25757 ACATTACAGACGTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCA 25816
|||| | || |||| || || || ||| ||||| ||| ||| ||| |||
Sbjct 567200 ACATCAAGGAGCCCGCCCAGCGAACCTACCTCTTTAACGCCATTGAGACCATCCCCTGCA 567141
Query 25817 TCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCG 25876
|| | |||||| |||||||| |||||| | || | | | |||| |
Sbjct 567140 TCCGAAAGAAGGCCGACTGGGCCATCCGATGGATCCAGGATAAGGACTCCTCATTTGCCC 567081
Query 25877 AGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCA 25936
|||| || || || || |||||||| ||||| ||||| ||||| ||| | || || | |
Sbjct 567080 AGCGTCTCGTTGCTTTCGCTGCTGTTGAGGGTATCTTCTTCAGTGGTGCCTTCGCCTCTA 567021
Query 25937 TCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCA 25996
|||||||||||||| || || ||||||||| ||| ||| |||||||||||||||
Sbjct 567020 TCTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGTCTGACCTTCTCCAACGAGCTCATCT 566961
Query 25997 GCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTAC 26040
| || |||||||| |||| || ||||||||||| ||| ||
Sbjct 566960 CTCGTGATGAGGGTCTTCACACTGACTTTGCCTGCCTCCTCCAC 566917
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928827372549440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |