Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702655
.1_202016-08-10] 1,501 sequences; 51,609,830 total letters
Query= NC_020104.1
Length=1021348
Score E
Sequences producing significant alignments: (Bits) Value
seq324 123 2e-22
>seq324
Length=941764
Score = 123 bits (136), Expect = 2e-22
Identities = 161/220 (73%), Gaps = 2/220 (1%)
Strand=Plus/Minus
Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610
|||||||||||| || | || || ||| ||| || || || || || | |||||
Sbjct 283244 ACGAAGACGGAGAACCAAGTGGAGAGTAGATTCCTTCTGAATGTTGTAGTCGGAAAGAGT 283185
Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670
|| | ||||||||||||||| ||||| || || || || |||||||| |||||||| ||
Sbjct 283184 TCGGCCATCTTCAAGTTGCTTGCCAGCGAAGATGAGTCGCTGTTGATCGGGAGGAATACC 283125
Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729
|||||||| || ||||| || ||| ||||| ||||| | || | | ||| |
Sbjct 283124 CTCCTTGTCCTGGATCTTGCTCTTCACATTATCAATGGTATCGGATGACTCGA-CTTCCA 283066
Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
| ||||| || || || ||||| ||||| ||||| |||||
Sbjct 283065 GAGTAATGGTCTTTCCAGTGAGGGTCTTGACGAAGATTTG 283026
Score = 111 bits (122), Expect = 1e-18
Identities = 154/213 (72%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610
||| || ||||| || |||||||| ||| ||| || || || || || || || ||
Sbjct 283016 ACGGAGGCGGAGGACGAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCGGCAAGGGT 282957
Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670
|| | |||||| ||||||||||||||||| || || || || || |||||||| || ||
Sbjct 282956 TCGGCCATCTTCGAGTTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGAGGGATGCC 282897
Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729
|||||||| ||||||||| || ||| || || ||||| | | | | ||||
Sbjct 282896 CTCCTTGTCCTGAATCTTTGACTTAACATTGTCGATGGTATCGGACGACTCGA-CCTCAA 282838
Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGA 480762
| || || || || || ||||| ||||| ||||
Sbjct 282837 GAGTGATGGTCTTGCCAGTGAGGGTCTTGACGA 282805
Score = 100 bits (110), Expect = 2e-15
Identities = 114/153 (75%), Gaps = 0/153 (0%)
Strand=Plus/Minus
Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676
|||||| | ||||| ||||| || |||||||| ||||||||||| ||||| || |||||
Sbjct 283406 ATCTTCCAACTGCTTACCAGCGAAGATAAGACGCTGTTGATCAGGGGGAATACCCTCCTT 283347
Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736
||| |||||||| || || || ||||| ||| || |||||||| ||
Sbjct 283346 GTCCTGAATCTTGCTCTTCACGTTGTCGATAGTGTCACTGGACTCGACCTCAAGGGTGAT 283287
Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
|| || |||||||||||||| || ||||| ||
Sbjct 283286 GGTCTTTCCGGTGAGAGTCTTCACAAAAATCTG 283254
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3268114814827148
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |