Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702655 .1_202016-08-10] 1,501 sequences; 51,609,830 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq546 154 2e-31 seq832 132 8e-25 seq1380 114 2e-19 seq609 98.7 2e-14 seq1403 86.0 1e-10 >seq546 Length=689558 Score = 154 bits (170), Expect = 2e-31 Identities = 233/328 (71%), Gaps = 5/328 (2%) Strand=Plus/Plus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 ||| || || ||| ||| | |||||| ||| || ||||||||||| || ||||| Sbjct 566947 ACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCGGGCATGAGACCACGCTT 567006 Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459 ||||||||| ||||| | ||| || ||| ||||| ||||| || || || || Sbjct 567007 CTTGAGCCAGAAGATAGAGGCGAAGGCACCACTGAAGAAGATACCCTCAACAGCAGCGAA 567066 Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCA 794519 | ||||| |||| |||||| | | | ||| | | |||||| || ||||| Sbjct 567067 AGCAACGAGACGCTGGGCAAATGAGGA---GTCCTTATCCTGGATCCATCGGATGGCCCA 567123 Query 794520 CTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGT-GGTCCTTCT 794578 || ||||| || | | |||| | || || |||||| |||||||| ||| | || Sbjct 567124 GTCGGCCTTCTTTCGGATGCAGGGGATGGTCTCAATGGCGTTAAAGAGGTAGGTTCG-CT 567182 Query 794579 CGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTT 794638 | | || ||||||| ||||||||| ||||| || ||||||||||| ||||||||||| | Sbjct 567183 GGGCGGGCTCCTTGATGTAGGTGTCAATGAGCAGGGAGTAGGTCTCGGAGTGGATGTTCT 567242 Query 794639 CGATGGCGATCTGGAAGCCATAAAAGCA 794666 | || |||||||||||| || ||||| Sbjct 567243 CCATCATGATCTGGAAGCCGTAGAAGCA 567270 Score = 118 bits (130), Expect = 2e-20 Identities = 181/257 (70%), Gaps = 1/257 (0%) Strand=Plus/Plus Query 793892 GACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAG 793951 ||| || ||||| || ||| | || ||| |||||| |||||||||||||| | || Sbjct 566626 GACACCGGCCTTCTGGTAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAG 566685 Query 793952 CGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGAG 794011 ||||| |||||| | ||| ||||||| | | ||| ||||||| || || Sbjct 566686 GGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTGGCCTTGTAAACCTTCTCGTTGCCAAG 566745 Query 794012 CGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCAT 794071 || |||| || || || |||||||| ||||||||||| ||||||| | | |||||| Sbjct 566746 CGCGACAAGGAGACGATCAGCGACGAACTCAATGTACTGCTTCATGAGGTCAGAGTTCAT 566805 Query 794072 GCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTC 794131 ||||| || || ||| || | ||| ||| ||||| | ||| ||| |||||| || Sbjct 566806 GCCGAGAAGGGCACAGGGAAGAGCCTCAGTGAGGAACTCCTGCTCAATCGTGACGGCATC 566865 Query 794132 GATGATGATCTGCCTGG 794148 | ||||| | ||||| Sbjct 566866 AGTAATGATAT-CCTGG 566881 >seq832 Length=168102 Score = 132 bits (146), Expect = 8e-25 Identities = 184/258 (71%), Gaps = 0/258 (0%) Strand=Plus/Plus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 ||||||||||||||| || |||| ||| ||||| || ||||| || |||| ||||| || Sbjct 151801 CTGGTCGACATAGCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAACACCGTTCGA 151860 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 |||||||| || || | ||||| ||| | || || | |||| || | || Sbjct 151861 TGTACCGTTGGTACCGGCGATGTAGGAGCCAGTAGCACGGATACGGTGCACGTTCAGACC 151920 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 || || || ||| ||||||||| | || || | || || || |||||||| ||||| Sbjct 151921 AATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGTAGATTCCCTC 151980 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779 || |||| ||||||| || | || ||||| || || ||| || | | ||||| Sbjct 151981 AATACTGTCGTCCTTCATATCAACCAAGAAGCAAGATGACAATTGGGGCTGAGGGGTGCC 152040 Query 2073780 GGCATTGAAGAGCGTGGG 2073797 ||| |||||||||||||| Sbjct 152041 GGCGTTGAAGAGCGTGGG 152058 >seq1380 Length=305787 Score = 114 bits (126), Expect = 2e-19 Identities = 92/111 (83%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 2035651 CCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTA 2035710 |||||||||||||||||||||| || || ||| | || |||||||| || || ||| | | Sbjct 39250 CCAACTACCTCGACATCAAGCCTCTTCTTGATGTCGGCTGCAAGACTGTTGCAAACATGA 39191 Query 2035711 TCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCAAGTACG 2035761 ||||||||||||| ||||| || ||||||||||| || ||||| | | ||| Sbjct 39190 TCAAGGGCAAGTCTCCCGAAGAGATCCGCAAGACTTTCAACATTACGAACG 39140 >seq609 Length=72127 Score = 98.7 bits (108), Expect = 2e-14 Identities = 77/92 (84%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 |||||||||||| |||||||||||||| |||||||||||| |||| || || ||| | | Sbjct 56586 GTACTTGGTGACAGCCTTGGTACCCTCAGAGACGGCGTGCTTGGCAAGCTCACCGGGGAG 56645 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGG 1485562 ||| ||||| || | ||||||||||| |||| Sbjct 56646 GATGAGGCGGACAGAAGTCTGGATCTCTCGGG 56677 >seq1403 Length=757572 Score = 86.0 bits (94), Expect = 1e-10 Identities = 118/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 2019204 GGCCGCCACAAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGCGGCCCAGCAG 2019263 || ||||| || | | ||||||||||| |||||| || | || |||| || ||||| Sbjct 616065 GGGCGCCATAAACTTGTTATCCTCGATGAAGCCGACAGCATGACTTCGGGTGCTCAGCAA 616124 Query 2019264 GCCCTCCGATCGACCATGGAAAAGTACACCAACACGACGCGGTTTGCGCTGGCCTGCAAC 2019323 ||||| || || ||||| | ||| ||||||| || || || || | ||||||||| Sbjct 616125 GCCCTTAGACGAACTATGGAGATCTACTCCAACACTACACGATTCGCTTTTGCCTGCAAC 616184 Query 2019324 ACGTCGTCGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATC 2019368 ||| | | |||||||| ||||||| || ||||||||| Sbjct 616185 CAGTCCAACAAGATCATCGAACCCCTCCAATCACGATGCGCCATC 616229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916086731783939