Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702655
.1_202016-08-10] 1,501 sequences; 51,609,830 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq546 154 2e-31
seq832 132 8e-25
seq1380 114 2e-19
seq609 98.7 2e-14
seq1403 86.0 1e-10
>seq546
Length=689558
Score = 154 bits (170), Expect = 2e-31
Identities = 233/328 (71%), Gaps = 5/328 (2%)
Strand=Plus/Plus
Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399
||| || || ||| ||| | |||||| ||| || ||||||||||| || |||||
Sbjct 566947 ACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCGGGCATGAGACCACGCTT 567006
Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459
||||||||| ||||| | ||| || ||| ||||| ||||| || || || ||
Sbjct 567007 CTTGAGCCAGAAGATAGAGGCGAAGGCACCACTGAAGAAGATACCCTCAACAGCAGCGAA 567066
Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCA 794519
| ||||| |||| |||||| | | | ||| | | |||||| || |||||
Sbjct 567067 AGCAACGAGACGCTGGGCAAATGAGGA---GTCCTTATCCTGGATCCATCGGATGGCCCA 567123
Query 794520 CTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGT-GGTCCTTCT 794578
|| ||||| || | | |||| | || || |||||| |||||||| ||| | ||
Sbjct 567124 GTCGGCCTTCTTTCGGATGCAGGGGATGGTCTCAATGGCGTTAAAGAGGTAGGTTCG-CT 567182
Query 794579 CGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTT 794638
| | || ||||||| ||||||||| ||||| || ||||||||||| ||||||||||| |
Sbjct 567183 GGGCGGGCTCCTTGATGTAGGTGTCAATGAGCAGGGAGTAGGTCTCGGAGTGGATGTTCT 567242
Query 794639 CGATGGCGATCTGGAAGCCATAAAAGCA 794666
| || |||||||||||| || |||||
Sbjct 567243 CCATCATGATCTGGAAGCCGTAGAAGCA 567270
Score = 118 bits (130), Expect = 2e-20
Identities = 181/257 (70%), Gaps = 1/257 (0%)
Strand=Plus/Plus
Query 793892 GACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAG 793951
||| || ||||| || ||| | || ||| |||||| |||||||||||||| | ||
Sbjct 566626 GACACCGGCCTTCTGGTAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAG 566685
Query 793952 CGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGAG 794011
||||| |||||| | ||| ||||||| | | ||| ||||||| || ||
Sbjct 566686 GGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTGGCCTTGTAAACCTTCTCGTTGCCAAG 566745
Query 794012 CGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCAT 794071
|| |||| || || || |||||||| ||||||||||| ||||||| | | ||||||
Sbjct 566746 CGCGACAAGGAGACGATCAGCGACGAACTCAATGTACTGCTTCATGAGGTCAGAGTTCAT 566805
Query 794072 GCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTC 794131
||||| || || ||| || | ||| ||| ||||| | ||| ||| |||||| ||
Sbjct 566806 GCCGAGAAGGGCACAGGGAAGAGCCTCAGTGAGGAACTCCTGCTCAATCGTGACGGCATC 566865
Query 794132 GATGATGATCTGCCTGG 794148
| ||||| | |||||
Sbjct 566866 AGTAATGATAT-CCTGG 566881
>seq832
Length=168102
Score = 132 bits (146), Expect = 8e-25
Identities = 184/258 (71%), Gaps = 0/258 (0%)
Strand=Plus/Plus
Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599
||||||||||||||| || |||| ||| ||||| || ||||| || |||| ||||| ||
Sbjct 151801 CTGGTCGACATAGCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAACACCGTTCGA 151860
Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659
|||||||| || || | ||||| ||| | || || | |||| || | ||
Sbjct 151861 TGTACCGTTGGTACCGGCGATGTAGGAGCCAGTAGCACGGATACGGTGCACGTTCAGACC 151920
Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719
|| || || ||| ||||||||| | || || | || || || |||||||| |||||
Sbjct 151921 AATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGTAGATTCCCTC 151980
Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779
|| |||| ||||||| || | || ||||| || || ||| || | | |||||
Sbjct 151981 AATACTGTCGTCCTTCATATCAACCAAGAAGCAAGATGACAATTGGGGCTGAGGGGTGCC 152040
Query 2073780 GGCATTGAAGAGCGTGGG 2073797
||| ||||||||||||||
Sbjct 152041 GGCGTTGAAGAGCGTGGG 152058
>seq1380
Length=305787
Score = 114 bits (126), Expect = 2e-19
Identities = 92/111 (83%), Gaps = 0/111 (0%)
Strand=Plus/Minus
Query 2035651 CCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTA 2035710
|||||||||||||||||||||| || || ||| | || |||||||| || || ||| | |
Sbjct 39250 CCAACTACCTCGACATCAAGCCTCTTCTTGATGTCGGCTGCAAGACTGTTGCAAACATGA 39191
Query 2035711 TCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCAAGTACG 2035761
||||||||||||| ||||| || ||||||||||| || ||||| | | |||
Sbjct 39190 TCAAGGGCAAGTCTCCCGAAGAGATCCGCAAGACTTTCAACATTACGAACG 39140
>seq609
Length=72127
Score = 98.7 bits (108), Expect = 2e-14
Identities = 77/92 (84%), Gaps = 0/92 (0%)
Strand=Plus/Plus
Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530
|||||||||||| |||||||||||||| |||||||||||| |||| || || ||| | |
Sbjct 56586 GTACTTGGTGACAGCCTTGGTACCCTCAGAGACGGCGTGCTTGGCAAGCTCACCGGGGAG 56645
Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGG 1485562
||| ||||| || | ||||||||||| ||||
Sbjct 56646 GATGAGGCGGACAGAAGTCTGGATCTCTCGGG 56677
>seq1403
Length=757572
Score = 86.0 bits (94), Expect = 1e-10
Identities = 118/165 (72%), Gaps = 0/165 (0%)
Strand=Plus/Plus
Query 2019204 GGCCGCCACAAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGCGGCCCAGCAG 2019263
|| ||||| || | | ||||||||||| |||||| || | || |||| || |||||
Sbjct 616065 GGGCGCCATAAACTTGTTATCCTCGATGAAGCCGACAGCATGACTTCGGGTGCTCAGCAA 616124
Query 2019264 GCCCTCCGATCGACCATGGAAAAGTACACCAACACGACGCGGTTTGCGCTGGCCTGCAAC 2019323
||||| || || ||||| | ||| ||||||| || || || || | |||||||||
Sbjct 616125 GCCCTTAGACGAACTATGGAGATCTACTCCAACACTACACGATTCGCTTTTGCCTGCAAC 616184
Query 2019324 ACGTCGTCGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATC 2019368
||| | | |||||||| ||||||| || |||||||||
Sbjct 616185 CAGTCCAACAAGATCATCGAACCCCTCCAATCACGATGCGCCATC 616229
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7916086731783939
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |