Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702655 .1_202016-08-10] 1,501 sequences; 51,609,830 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq1081 125 5e-24 seq324 125 5e-24 seq58 98.7 6e-16 >seq1081 Length=286081 Score = 125 bits (138), Expect = 5e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||||||| | |||| ||||||||| ||||| ||||| ||| |||| |||| Sbjct 157051 AGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGTCCATCC 157110 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| || || ||||| ||||| |||||||| | || | ||||||||||| Sbjct 157111 TCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 157170 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || | || | ||| || |||| ||| || ||| Sbjct 157171 TGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTC 157230 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || |||||||||||||| || || |||||||| Sbjct 157231 TTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 157262 >seq324 Length=941764 Score = 125 bits (138), Expect = 5e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || ||||||| || ||||||||||||||| ||||| || | |||| |||| Sbjct 283462 AGAACGAGGTGAAGAGTTGACTCCTTCTGAATGTTGTAGTCGCTTAAGGTGCGACCATCT 283403 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| ||||| || |||||||| || || || || || | || | ||||||||||| Sbjct 283402 TCCAACTGCTTACCAGCGAAGATAAGACGCTGTTGATCAGGGGGAATACCCTCCTTGTCC 283343 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || ||| | || | ||| ||| |||||| |||| ||| |||||| Sbjct 283342 TGAATCTTGCTCTTCACGTTGTCGATAGTGTCACTGGACTCGACCTCAAGGGTGATGGTC 283283 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| ||||| ||||| ||||| |||||||| Sbjct 283282 TTTCCGGTGAGAGTCTTCACAAAAATCTGCAT 283251 Score = 114 bits (126), Expect = 8e-21 Identities = 158/219 (72%), Gaps = 8/219 (4%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || ||||||| ||| ||||||||||||||| || || || || |||| | || Sbjct 282724 AGAACAAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGAGAGAGTGCGGCCGTCC 282665 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| |||||||| |||| ||||||||||| | || | ||||||||||| Sbjct 282664 TCAAGCTGCTTGCCGGCGAAAATCAAGCGTTGCTGGTCGGGGGGGATGCCCTCCTTGTCC 282605 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | || || ||||| || | ||||| || | ||| || || | ||| || Sbjct 282604 TGAATCTTGGACTTGAC--AT--TGTCGATAGTGTCGGAAGACTCAACCTCGAGGGTGAT 282549 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATGAT 34980 |||||| || || | |||||| || |||||||||||||| Sbjct 282548 GGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCATGAT 282510 Score = 109 bits (120), Expect = 4e-19 Identities = 148/204 (73%), Gaps = 8/204 (4%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| || |||| ||| |||||||||||||| ||||| | ||| | || |||| Sbjct 283006 AGGACGAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCGGCAAGGGTTCGGCCATCT 282947 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || ||||||||||| || |||||||| || |||||||| | || | ||||||||||| Sbjct 282946 TCGAGTTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCC 282887 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | || ||| || || || | ||||| || | |||||| |||| || || Sbjct 282886 TGAATCTTTGACTTAAC--AT--TGTCGATGGTATCGGACGACTCGACCTCAAGAGTGAT 282831 Query 34942 GGTCTTTCCCGTGAGGGTCTTTAC 34965 |||||| || ||||||||||| || Sbjct 282830 GGTCTTGCCAGTGAGGGTCTTGAC 282807 >seq58 Length=488489 Score = 98.7 bits (108), Expect = 6e-16 Identities = 134/185 (72%), Gaps = 8/185 (4%) Strand=Plus/Plus Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847 ||||||| ||||| ||||| || || | || |||| || || ||||| || ||||||| Sbjct 8742 CCTTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCGAGCTGCTTACCAGCGAAGA 8801 Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907 ||||||| || ||||| | || | ||||||||||| | || || ||||| || Sbjct 8802 TCAGTCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGAC--AT- 8858 Query 34908 CTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963 | ||||| || || |||||| || | ||| |||||||| ||||| |||||||| Sbjct 8859 -TGTCGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTC 8917 Query 34964 ACAAA 34968 || || Sbjct 8918 ACGAA 8922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325686841959119