Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702655
.1_202016-08-10] 1,501 sequences; 51,609,830 total letters
Query= NC_025412.1
Length=369360
Score E
Sequences producing significant alignments: (Bits) Value
seq324 107 5e-18
>seq324
Length=941764
Score = 107 bits (118), Expect = 5e-18
Identities = 157/220 (71%), Gaps = 4/220 (2%)
Strand=Plus/Plus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTC--TG 206230
||||| ||| || || ||||| ||||| || ||||| | || || || || | ||
Sbjct 283254 CAGATTTTTGTGAAGACTCTCACCGGAAAGACCATCACCCTTGAGGTCGA--GTCCAGTG 283311
Query 206231 ACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTC 206290
|||| |||| || ||| |||||||| || || || || ||| || || |
Sbjct 283312 ACACTATCGACAACGTGAAGAGCAAGATTCAGGACAAGGAGGGTATTCCCCCTGATCAAC 283371
Query 206291 AAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACG 206350
| | ||||||||||| || ||||||||||||||||| | || || ||| ||||||
Sbjct 283372 AGCGTCTTATCTTCGCTGGTAAGCAGTTGGAAGATGGTCGCACCTTAAGCGACTACAACA 283431
Query 206351 TCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390
| ||||| ||||| ||||||||||| ||| | |||||||
Sbjct 283432 TTCAGAAGGAGTCAACTCTTCACCTCGTTCTCCGACTTCG 283471
Score = 86.0 bits (94), Expect = 1e-11
Identities = 82/105 (78%), Gaps = 0/105 (0%)
Strand=Plus/Minus
Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811
||||||| | ||| ||||||||||| ||||| ||||| | || ||||| || ||
Sbjct 283471 CGAAGTCGGAGAACGAGGTGAAGAGTTGACTCCTTCTGAATGTTGTAGTCGCTTAAGGTG 283412
Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856
| |||||||||| |||||| || ||||||||||| || ||||||
Sbjct 283411 CGACCATCTTCCAACTGCTTACCAGCGAAGATAAGACGCTGTTGA 283367
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1181798071739421
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |