Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702655
.1_202016-08-10] 1,501 sequences; 51,609,830 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq546 196 7e-44
seq832 118 2e-20
>seq546
Length=689558
Score = 196 bits (216), Expect = 7e-44
Identities = 356/507 (70%), Gaps = 12/507 (2%)
Strand=Plus/Minus
Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834
||| ||| |||||||| || ||||| ||||| ||||| ||||| || |||||| | || |
Sbjct 567484 GATTTGGCAAATGTAC-AAGAAGGCTGAGGCTTCCTTCTGGACTGCTGAGGAGATTGATC 567426
Query 1455835 TCGGCGCCGA-CACGGTCCACTGGGTGT--CGC-TGAGCGACGACGAGCGCCATTTCATC 1455890
| | || | | | ||||| ||| ||| | ||| |||| ||| ||
Sbjct 567425 TTTCCAAGGATCTCCATG-ACTGGAACAACCGCCTGACTGCCGATGAGCAGTTCTTCGTC 567367
Query 1455891 AAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGG 1455950
||| |||| || ||||||||| ||| ||||| || || ||||||||| | ||
Sbjct 567366 TCTCACATCCTTGC-TTTTTTCGCTGCCTCTGATGGTATTGTCAACGAGAACCTCGTCGA 567308
Query 1455951 CCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGC 1456010
|| || | |||||||| | || ||||| |||| || ||||| |||||||||
Sbjct 567307 GCGATTCAGTGGCGAGGTCCAGATCCCCGAGGCTCGTTGCTTCTACGGCTTCCAGATCAT 567248
Query 1456011 CATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCC 1456070
|| || ||||||||||| || |||||||| || || || ||||||||| ||||||| ||
Sbjct 567247 GATGGAGAACATCCACTCCGAGACCTACTCCCTGCTCATTGACACCTACATCAAGGAGCC 567188
Query 1456071 GGTCGAGAAGGACC-ACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGG 1456129
| | || | ||| |||||||| |||||| || || | || | | | || ||||
Sbjct 567187 CGCCCAGC-GAACCTACCTCTTTAACGCCATTGAGACCATCCCCTGCATCCGAAAGAAGG 567129
Query 1456130 CCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGT 1456189
|||||||||| || |||||| | | | || ||| || |||||| |||| |||||
Sbjct 567128 CCGACTGGGCCATCCGATGGATCCAGGA-TAAGGACTCCTCA-TTTGCCCAGCGTCTCGT 567071
Query 1456190 CGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCT 1456248
| || || || || ||||| ||||| ||| || ||| | | ||||| |||||
Sbjct 567070 TGCTTTCGCTGCTGTTGAGGGTATCTTCTTCAGTGGTGCCTTCGCCTCTATCTTCTGGCT 567011
Query 1456249 CAAGAAGCGCGGCCTCATGCCCGGTCT 1456275
||||||||| || ||||||||||||||
Sbjct 567010 CAAGAAGCGTGGTCTCATGCCCGGTCT 566984
Score = 86.0 bits (94), Expect = 9e-11
Identities = 168/243 (69%), Gaps = 4/243 (2%)
Strand=Plus/Minus
Query 1456532 GAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCGCTCATCGGC 1456591
|| |||||| ||| ||| | ||||| ||| ||| | || || || || |||||
Sbjct 566865 GATGCCGTCACGATTGAGCAGGAGTTCCTCACTGAGGCTCTTCCCTGTGCCCTTCTCGGC 566806
Query 1456592 ATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCCTGCTCGCGG 1456651
|||||| | | |||||| ||||||||||| || ||||| || || || || | |
Sbjct 566805 ATGAACTCTGAC-CTCATGAAGCAGTACATTGAGTTC-GTCGCTGATCGTCTCCTTGTCG 566748
Query 1456652 CGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATGGAGTTGATC 1456711
|||| ||| || ||||| ||| | | ||||||| ||| | |||||| |||
Sbjct 566747 CGCTTGGCAACG-AGAAGGTTTACAAGGCCACCAACCCCTTCGACTTCATGGAGAACATC 566689
Query 1456712 TCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCG-TGGCGAGTACGCCAAGGCCGGC 1456770
|| || | |||||||||||||| |||||| || | || ||| ||| ||||||||
Sbjct 566688 TCCCTTGGTGGCAAGACCAACTTCTTCGAGAAGCGTGTTGCCGACTACCAGAAGGCCGGT 566629
Query 1456771 GTC 1456773
|||
Sbjct 566628 GTC 566626
>seq832
Length=168102
Score = 118 bits (130), Expect = 2e-20
Identities = 181/258 (70%), Gaps = 0/258 (0%)
Strand=Plus/Minus
Query 259925 CCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGGAC 259984
||||||||||| || |||||||| || | || || || || ||||| || | ||
Sbjct 152058 CCCACGCTCTTCAACGCCGGCACCCCTCAGCCCCAATTGTCATCTTGCTTCTTGGTTGAT 151999
Query 259985 ATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCC 260044
||||||| ||| || ||||| ||||| || || |||||| || || | ||||||
Sbjct 151998 ATGAAGGACGACAGTATTGAGGGAATCTACGATACTCTCAAGACCTGTGCCATGATCTCC 151939
Query 260045 AAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTACGTG 260104
||| ||| || || || ||| | || ||| | || || | ||| ||||| |
Sbjct 151938 AAGATGGCTGGTGGTATTGGTCTGAACGTGCACCGTATCCGTGCTACTGGCTCCTACATC 151879
Query 260105 GCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACACG 260164
|| || |||||||| || ||||| |||| || |||||||| || || ||| ||||
Sbjct 151878 GCCGGTACCAACGGTACATCGAACGGTGTTGTTCCTATGCTTCGTGTCTTCAACAACACT 151819
Query 260165 GCGCGCTACGTCGACCAG 260182
|| ||||| |||||||||
Sbjct 151818 GCTCGCTATGTCGACCAG 151801
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7177666425791162
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |