Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702655
.1_202016-08-10] 1,501 sequences; 51,609,830 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq324 163 9e-35
seq633 149 2e-30
seq610 120 9e-22
seq1081 105 2e-17
>seq324
Length=941764
Score = 163 bits (180), Expect = 9e-35
Identities = 177/232 (76%), Gaps = 2/232 (1%)
Strand=Plus/Minus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||||||||| | | ||||| | || |||||||| || || ||||| || || ||
Sbjct 283253 CATACCACCACGAAGACGGAGAACCAAGTGGAGAGTAGATTCCTTCTGAATGTTGTAGTC 283194
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
|| | ||||| |||||||||||||| || ||||| ||||| || || || ||||| ||
Sbjct 283193 GGAAAGAGTTCGGCCATCTTCAAGTTGCTTGCCAGCGAAGATGAGTCGCTGTTGATCGGG 283134
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTT-ACATTATCAATCGAATCAGATGGTT 140685
|||||| || || || ||||| || || ||| || ||||||||||| | ||| |||| |
Sbjct 283133 AGGAATACCCTCCTTGTCCTGGATCTT-GCTCTTCACATTATCAATGGTATCGGATGACT 283075
Query 140686 CAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
| ||||| || |||| |||||||| || || || || || || || |||||
Sbjct 283074 CGACTTCCAGAGTAATGGTCTTTCCAGTGAGGGTCTTGACGAAGATTTGCAT 283023
Score = 145 bits (160), Expect = 2e-29
Identities = 166/223 (74%), Gaps = 0/223 (0%)
Strand=Plus/Minus
Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562
||| |||||||||||| | | || || |||||||| ||||| || || ||||| || |
Sbjct 283029 TTTGCATACCACCACGGAGGCGGAGGACGAGATGAAGGGTAGATTCCTTCTGAATGTTGT 282970
Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622
| || | | ||||| |||||||| ||||| |||||||||||||| || || ||||| |
Sbjct 282969 AGTCGGCAAGGGTTCGGCCATCTTCGAGTTGCTTTCCAGCAAAGATCAGGCGCTGCTGGT 282910
Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682
||||||| || || || || |||||||| || | || ||||| || || | ||| || |
Sbjct 282909 CAGGAGGGATGCCCTCCTTGTCCTGAATCTTTGACTTAACATTGTCGATGGTATCGGACG 282850
Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725
|| || ||||| || | ||||| || || || || || ||
Sbjct 282849 ACTCGACCTCAAGAGTGATGGTCTTGCCAGTGAGGGTCTTGAC 282807
Score = 143 bits (158), Expect = 8e-29
Identities = 170/228 (75%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 140511 CCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGAT 140570
||||| || | || ||||| || |||||||| ||||| || ||||| || || || |
Sbjct 283477 CCACCGCGAAGTCGGAGAACGAGGTGAAGAGTTGACTCCTTCTGAATGTTGTAGTCGCTT 283418
Query 140571 AATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGA 140630
|| || || |||||||| | || || ||||| ||||| ||||| || |||||||| |||
Sbjct 283417 AAGGTGCGACCATCTTCCAACTGCTTACCAGCGAAGATAAGACGCTGTTGATCAGGGGGA 283358
Query 140631 ATTCCTTCTTTATCCTGAATTTTAGCTTTT-ACATTATCAATCGAATCAGATGGTTCAAC 140689
|| || || || |||||||| || ||| || || || || || | ||| | || ||
Sbjct 283357 ATACCCTCCTTGTCCTGAATCTT-GCTCTTCACGTTGTCGATAGTGTCACTGGACTCGAC 283299
Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
||||| || | ||||||||||| || || || ||||||||||||||
Sbjct 283298 CTCAAGGGTGATGGTCTTTCCGGTGAGAGTCTTCACAAAAATCTGCAT 283251
Score = 136 bits (150), Expect = 1e-26
Identities = 171/235 (73%), Gaps = 0/235 (0%)
Strand=Plus/Minus
Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562
||| |||||||||||| | | |||||||| |||||||| ||||| || ||||| || |
Sbjct 282747 TTTGCATACCACCACGGAGGCGGAGAACAAGGTGAAGAGTGGACTCCTTCTGAATGTTGT 282688
Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622
||||||| | || || || || ||||| || || || || || || | |||||||| |
Sbjct 282687 AATCAGAGAGAGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAAATCAAGCGTTGCTGGT 282628
Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682
| || || || || || || |||||||| || | || ||||| || || | || || |
Sbjct 282627 CGGGGGGGATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATAGTGTCGGAAG 282568
Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
||||| || || || | ||||| ||||| | || || || || ||||||||
Sbjct 282567 ACTCAACCTCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 282513
>seq633
Length=415937
Score = 149 bits (164), Expect = 2e-30
Identities = 438/668 (66%), Gaps = 9/668 (1%)
Strand=Plus/Plus
Query 349262 GAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAA 349321
|| || || || || || || |||||| |||| || || |||| ||| | ||| |||||
Sbjct 194172 GATATCATCGCCAACGACCAGGGTAACCGAACTACCCCCTCATTCGTCGGATTCACCGAC 194231
Query 349322 ACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACG 349381
|| |||||| ||||||||||| | || || || |||| || || || | || ||
Sbjct 194232 ACCGAGCGTCTGATTGGTGATGCCGCCAAGAACCAAGTCGCCATGAACCCCCAGAACACT 194291
Query 349382 GTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGA--CAAATCTACACAATCTG 349439
|| || || || |||||| | || ||| | | || | || | | | || | |
Sbjct 194292 GTCTTCGACGCCAAGCGATTGATCGGTCGCAAGTTCGCCGATCCTGAGGTTCAGG--CCG 194349
Query 349440 ATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAGG 349499
| | || || || || || | | || | | ||| |||| ||| || | || ||||
Sbjct 194350 ACATGAAGCACTTCCCCTTCAAGATCGT-CGACAAG--GGTGGTAAGCCCAACATCGAGG 194406
Query 349500 TTGAATATAAAGGTGA-ACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTA 349558
|||| | || || || || || || || ||||| || || || | ||| | |
Sbjct 194407 TTGAGTTCAAGGGCGAGACCAAGACC-TTCACCCCCGAGGAGATCTCCGCCATGATCCTC 194465
Query 349559 GTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATT 349618
|| ||| || | || || | || | || || || || | | |||||| ||
Sbjct 194466 ACCAAGATGCGTGAGACCGCCGAGTCTTACCTCGGCGAGACTGTCAACAACGCTGTTGTT 194525
Query 349619 ACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATT 349678
||||| || ||||| || || ||| | |||||| || || || |||||||| |||
Sbjct 194526 ACTGTCCCCGCCTACTTCAACGATTCTCAGCGTCAAGCTACCAAGGATGCTGGTCTCATC 194585
Query 349679 GCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGG 349738
|| || | || ||||| |||| || || || || |||||||| || ||||| || ||
Sbjct 194586 GCCGGTCTCAACGTTCTCCGAATCATCAACGAGCCTACTGCTGCCGCCATTGCCTACGGT 194645
Query 349739 CTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACT 349798
||||| || | | || || || | || || || ||| | |||||||||||
Sbjct 194646 CTTGACAAGAAGGTCGAGGGCGAGCGCAACGTCCTCATCTTCGATCTTGGTGGTGGTACC 194705
Query 349799 TTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGT 349858
|| ||||| || || || || |||| ||||| || || || || || | || || |||
Sbjct 194706 TTCGATGTTTCTCTCCTTACCATTGAGGAGGGTATCTTCGAGGTCAAGTCTACCGCCGGT 194765
Query 349859 GATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAA 349918
|| || || | ||||| || || || || || ||||| || || || || || |||
Sbjct 194766 GACACTCACTTGGGTGGTGAGGACTTCGACAACCGTCTGGTCAACCACTTCGTAAACGAA 194825
Query 349919 TTTAAGCG 349926
|| |||||
Sbjct 194826 TTCAAGCG 194833
>seq610
Length=158298
Score = 120 bits (132), Expect = 9e-22
Identities = 193/276 (70%), Gaps = 6/276 (2%)
Strand=Plus/Plus
Query 378201 ATCTTCTAATGCTTTAATAAGTCGTCGAGAAATATAACCAGTTTGACTAGTTTTAACTGC 378260
|||||| | || |||| | |||||| |||||||| |||| ||| || |||||
Sbjct 72602 ATCTTCCAGGGCCTTAACCAATCGTCGCTGGATATAACCTGTTTCGGCAGTCTTGACTGC 72661
Query 378261 AGTATCAATTAAACCAACACGACCACCCATTGCATGGAAGAATAATTCAGTAGGAGTAAG 378320
||||||||| | ||| | |||||| |||| || |||||||| ||||| ||||||| ||
Sbjct 72662 AGTATCAATGAGACCTTCTCGACCAGCCATGGCGTGGAAGAAAAATTCGCTAGGAGTGAG 72721
Query 378321 TCCACCAATAAATGAACTCTCAATAAATCCTCTTGCGCCTGGCGAATCATCATATTTTGT 378380
|||| | | || |||| | || || | || | || || | ||| | || ||
Sbjct 72722 ACCACGGAGGTAAGAGTTCTCGACGAAGCCACGGGCCTCAGGTGAGTAATCGTCCTTGGT 72781
Query 378381 ATAATGAGGTAATGTACGATTCTCAAACCCATATGGAATTCGTTTTCCATCAACATTCTG 378440
| ||||||||||| |||| || || ||| | ||||| || || || || ||| | ||
Sbjct 72782 GAAGTGAGGTAATGTGCGATACTTGAAACCAAAAGGAATACGCTTGCCTTCGACAATTTG 72841
Query 378441 TTGAC---CAAGTGCAGAAACCATTTGAGCAATATT 378473
|||| |||| |||| |||||||| ||||||
Sbjct 72842 CTGACCGACAAGCGCAG---TCATTTGAGAAATATT 72874
Score = 113 bits (124), Expect = 1e-19
Identities = 105/133 (79%), Gaps = 3/133 (2%)
Strand=Plus/Plus
Query 377458 CGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAGTGGAAAGTATTA 377517
|||||||||||| | ||||| ||| || || | |||||||| || ||||| || ||
Sbjct 71841 CGTGGCACACCAAGAGTAACGTTC---TTGGACGACACACCAGCGAAATGGAAGGTGTTC 71897
Query 377518 AGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACGCCAACCATTTCT 377577
|| || | ||||||| ||||||||||| |||||||| || | ||| |||||||||||
Sbjct 71898 AGTGTCATCTGAGTAGCAGGCTCACCAATAGACTGCGCAGCCAGAACACCAACCATTTCA 71957
Query 377578 CCAGGATTGACAA 377590
||||| |||||||
Sbjct 71958 CCAGGGTTGACAA 71970
>seq1081
Length=286081
Score = 105 bits (116), Expect = 2e-17
Identities = 162/231 (70%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||||||||| | | || || || || || || ||||| || || || || || ||
Sbjct 157032 CATACCACCACGGAGGCGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 157091
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
| || || ||||| || || || || ||||||||||| || || ||||| |||||
Sbjct 157092 GCTCAGGGTGCGTCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGG 157151
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
|| || || || || ||||| || || | || || || || || | || || | ||
Sbjct 157152 GGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTC 157211
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|| ||||| || | ||||| || || || || || || |||||||||||
Sbjct 157212 CACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 157262
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1515225259290303
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |