Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702655 .1_202016-08-10] 1,501 sequences; 51,609,830 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq1081 129 4e-25 seq324 125 5e-24 seq58 100 2e-16 >seq1081 Length=286081 Score = 129 bits (142), Expect = 4e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||||||| || ||| |||||| ||||||||||| ||| || ||| | || || Sbjct 157054 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGTCCATCCTCG 157113 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || |||||||| | |||||||| || | || | || ||||| ||| Sbjct 157114 AGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 157173 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | | | |||||||||| || |||||||| | || |||||||| Sbjct 157174 ATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTC 157233 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||||||||||||| ||||| || ||||| Sbjct 157234 CCCGTGAGGGTCTTGACGAAAATCTGCAT 157262 >seq324 Length=941764 Score = 125 bits (138), Expect = 5e-24 Identities = 158/215 (73%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || |||||||| ||| |||||| || ||||||||||| | ||| ||| |||| || Sbjct 282721 ACAAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGAGAGAGTGCGGCCGTCCTCA 282662 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| ||||| || ||||| || ||||| || | || | || ||||| ||| Sbjct 282661 AGCTGCTTGCCGGCGAAAATCAAGCGTTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGA 282602 Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| ||| || ||| | || ||||||| || || ||||| | || || |||| Sbjct 282601 ATCTTGGACTTGACATTGT--CGATAGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCT 282544 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341 | || || | |||||| |||||||| ||||||||| Sbjct 282543 TGCCGGTCAAGGTCTTGACGAAGATCTGCATGATG 282509 Score = 118 bits (130), Expect = 8e-22 Identities = 155/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGC--GAGTTGGCGCTCGTCGT 44186 |||| ||| || || ||||| || |||||||| |||| ||||| | || | || | Sbjct 283231 ACCAAGTGGAGAGTAGATTCCTTCTGAATGTTGTAGTCGGAAAGAGTTCG-GC-CATCTT 283174 Query 44187 CCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCG 44246 | || ||||| || || ||||| | ||||| ||||| | ||| | ||| ||||| ||| Sbjct 283173 CAAGTTGCTTGCCAGCGAAGATGAGTCGCTGTTGATCGGGAGGAATACCCTCCTTGTCCT 283114 Query 44247 TTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| ||||| | | ||||| |||| || || || |||| ||||| |||| Sbjct 283113 GGATCTTGCTCTTCACATTATCAATGGTATCGGATGACTCGACTTCCAGAGTAATGGTCT 283054 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||| ||||||||||| |||||||||||||| Sbjct 283053 TTCCAGTGAGGGTCTTGACGAAGATTTGCAT 283023 Score = 96.9 bits (106), Expect = 2e-15 Identities = 143/201 (71%), Gaps = 4/201 (2%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || || ||||| || ||||| || |||||||| ||||| || || | || || Sbjct 283003 ACGAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCGGCAAGGGTTCGGCCATCTTCG 282944 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 || ||||| || |||||||||| |||||||| || | ||| | || ||||| ||| Sbjct 282943 AGTTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGA 282884 Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| ||| || ||| | ||||| |||| || || ||||| | || || |||| Sbjct 282883 ATCTTTGACTTAACATTGT--CGATGGTATCGGACGACTCGACCTCAAGAGTGATGGTCT 282826 Query 44307 TTCCCGTGAGGGTCTTCACGA 44327 | || ||||||||||| |||| Sbjct 282825 TGCCAGTGAGGGTCTTGACGA 282805 >seq58 Length=488489 Score = 100 bits (110), Expect = 2e-16 Identities = 133/183 (73%), Gaps = 4/183 (2%) Strand=Plus/Plus Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207 |||| ||||||||||| |||| ||| || | || || |||||||| || || |||| Sbjct 8742 CCTTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCGAGCTGCTTACCAGCGAAGA 8801 Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGT 44265 ||| ||||| || || | || | || ||||| ||| ||||| ||| || ||| Sbjct 8802 TCAGTCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 8861 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | |||||||| | ||| || ||||| | || || ||||| ||||| ||||||||||| Sbjct 8862 --CGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCAC 8919 Query 44326 GAA 44328 ||| Sbjct 8920 GAA 8922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359983814538117