Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001703455 .1_202016-08-10] 1,133 sequences; 48,659,641 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq204 269 3e-67 seq168 149 6e-31 seq172 123 3e-23 seq207 120 3e-22 >seq204 Length=536571 Score = 269 bits (298), Expect = 3e-67 Identities = 551/809 (68%), Gaps = 16/809 (2%) Strand=Plus/Minus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||| ||||| || |||||||| | |||||| | || || Sbjct 426063 ATTTGGCAAATGTACAAGAAGGCTGAGGCTTCCTTCTGGACTGCTGAGGAGATTGATCTT 426004 Query 116696 TCCAAGGA-CACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAA 116751 |||||||| | | | ||||||| | ||| ||| | | | |||| ||| || Sbjct 426003 TCCAAGGATCTCCA-CGACTGGAACAACCGCCTGACTGCCGATGAGCAGTTCTTCGTCTC 425945 Query 116752 GCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG 116811 ||| | || || || ||||| ||| || || || ||||||||||| || |||||||| Sbjct 425944 TCACATCCTTGCTTTCTTCGCTGCCTCTGATGGTATTGTCAACGAGAACCTCGTCGAGCG 425885 Query 116812 TTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871 ||| | ||||| ||| | ||||||| || |||||||||||||| |||||| || Sbjct 425884 ATTCAGTGGCGAGGTCCAGATCCCCGAGGCTCGTTGCTTCTACGGCTTCCAGATCATGAT 425825 Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT----GCGCTCTT 116927 ||||||| | ||||| || | || || ||||| ||||| ||| | | || | Sbjct 425824 GGAGAACATCCACTCCGAGACCTACTCCCTGCTCATTGACACCTACATCAAGGAGCCCGC 425765 Query 116928 CGGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGG 116987 | | ||| || | | | | |||||||| ||||| || || ||| || | |||||| Sbjct 425764 CCA--GCGAACCTACCTCTTT--AACGCCATTGAGACCATTCCCTGCATCCGAAAGAAGG 425709 Query 116988 CCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGG 117047 |||| ||||| | || |||||| | | || || |||| | | |||| || || | Sbjct 425708 CCGACTGGGCCATCCGATGGATCCAGGATAAGGACTCCTCCTTTGCCCAGCGTCTCGTTG 425649 Query 117048 CCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCA 117107 ||||||| || || ||||| ||||||| || |||||| | || || ||||||| Sbjct 425648 CCTTCGCTGCTGTTGAGGGTATCTTCTTCAGTGGTGCCTTCGCCTCTATCTTCTGGCTCA 425589 Query 117108 AGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGG 117167 |||| || || ||||||||||| ||||| ||| ||||||||||||||| | || |||| Sbjct 425588 AGAAGCGTGGTCTCATGCCCGGTCTGACCTTCTCCAACGAGCTCATCTCTCGTGATGAGG 425529 Query 117168 GTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGG 117227 |||| || ||||||||||| | || | || | | || | ||| | Sbjct 425528 GTCTTCACACTGACTTTGCCTGCCTCCTCCACTCCCACCTCAAGGGTCGTGCCAGCAAGC 425469 Query 117228 CGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAG 117287 | || ||| ||| | || ||||| ||| |||| |||||| |||||||| || | Sbjct 425468 AGATGATCCAGGATATCATTACTGACGCCGTCACCATTGAGCAGGAGTTCCTCACTGAGG 425409 Query 117288 CGC-TGCCGGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTC 117346 | | | || |||| || || || | || | || ||| ||| ||||| |||||| Sbjct 425408 CTCTTCCCTGTGC-CCTTCTCGGCATGAACTCTGACCTCATGAAGCAGTACATTGAGTTC 425350 Query 117347 GTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCG 117406 ||||| || | || || ||| ||| | | || ||| ||||| | ||||||| Sbjct 425349 GTCGCTGATCGTCTCCTTGTCGCGCTTGGCAACGAGAAGGTTTACAAGGCCACCAACCCC 425290 Query 117407 CTGGACTTTATGAACCTCATCT-CCTTGG 117434 | ||||| ||| | ||||| |||||| Sbjct 425289 TTCGACTTCATGGAGAACATCTCCCTTGG 425261 >seq168 Length=541571 Score = 149 bits (164), Expect = 6e-31 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || || |||||||| || || |||||| | || || || | Sbjct 348861 AAGATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 348802 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 |||||| | | | | ||||| || || | ||||| |||||||||||| | ||| Sbjct 348801 TCCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGAC 348742 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| |||||||||| || ||||| ||||| || || | |||||||| | ||||||| Sbjct 348741 CAGCAGCGACTCATCTTTGCTGGCAAGCAGCTCGAGGATGGACGCACCCTGAGCGACTAC 348682 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||||||| |||| || || || || Sbjct 348681 AACATCCAGAAGGAGTCCACCCTCCACCTGGT 348650 >seq172 Length=381824 Score = 123 bits (136), Expect = 3e-23 Identities = 136/181 (75%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || || |||||||| ||||||||| |||| ||||| || | |||| | | Sbjct 230410 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATC 230351 Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | | ||||| || || | ||||| |||||||| ||| ||||||| || ||||| Sbjct 230350 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAACAGCGACTG 230291 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| ||| || || ||||| || || | || || ||| ||||||||||||||||||| Sbjct 230290 ATCTTCGCTGGTAAGCAGCTCGAGGATGGCCGAACTCTCTCCGACTACAACATCCAGAAG 230231 Query 40879 G 40879 | Sbjct 230230 G 230230 >seq207 Length=801058 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || ||||| ||||||||| |||| || || | || Sbjct 248731 ATGCAGATCTTCGTCAAGACCTTGACCGGCAAGACCATCACCCTCGAGGTTGAGTCTTCC 248672 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | ||||| || |||| ||||| |||||||| ||| | |||||| Sbjct 248671 GACACTATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCCCCCGACCAG 248612 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| | || | ||| ||||| ||||| || |||| ||||| ||| || |||||| Sbjct 248611 CAACGCTTGATTTTCGCCGGCAAGCAGCTTGAGGACGGCCGCACTCTCTCTGATTACAAC 248552 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 || ||||||||| |||| || || || || Sbjct 248551 ATTCAGAAGGAGTCCACTCTTCACCTTGT 248523 Score = 111 bits (122), Expect = 2e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || ||||| || || ||||||||| | || ||||| ||| Sbjct 247993 ATGCAGATTTTTGTGAAGACTCTCACCGGAAAGACCATCACCCTTGAGGTCGAGTCCAGT 247934 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | ||| || |||| ||||| ||||| || ||| | || || Sbjct 247933 GACACTATCGACAACG-TGAAGAGCAAGATTCAGGACAAGGAGGGTATTCCCCCTGATCA 247875 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || || || |||| ||| || || ||| |||| || | |||||| | | ||||||||| Sbjct 247874 ACAGCGTCTTATCTTCGCTGGTAAGCAGTTGGAAGATGGTCGCACCTTGAGCGACTACAA 247815 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||||| | || || || || || Sbjct 247814 CATCCAGAAGGAGTCAACTCTTCACCTCGT 247785 Score = 109 bits (120), Expect = 6e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 40696 ATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGC 40755 ||| |||| || || ||||| ||||| |||||||| | || ||||| | |||| | | Sbjct 248443 ATAGTCGTCAAGACCCTCACTGGCAAGACCATCACTCTTGAGGTCGAGTCGTCCGATACC 248384 Query 40756 GTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGA 40815 | | | | ||| ||| |||| ||||| ||||||||||| | |||||||| || Sbjct 248383 ATCGACAATGTTAAGTCAAAGATTCAGGACAAGGAGGGCATCCCTCCTGACCAGCAGCGC 248324 Query 40816 CTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAG 40875 || |||| || || || || || || |||| || ||||| |||||||||||| ||| Sbjct 248323 CTGATCTTTGCTGGAAAGCAACTCGAAGACGGCCGAACCCTTGCCGACTACAACATTCAG 248264 Query 40876 AAGGAGGCCACGCTGCATCTAGT 40898 ||||| | || || ||||| || Sbjct 248263 AAGGAATCTACCCTTCATCTCGT 248241 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || ||||| || || ||||| || | || ||||| | || Sbjct 248221 ATGCAAATCTTCGTCAAGACCCTCACTGGAAAGACCATTACTCTGGAAGTCGAGTCATCC 248162 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | | ||| || || | ||||| ||||| || || | || || Sbjct 248161 GATACCATTGATAATGTGAAGAGCAAGATCCAGGACAAGGAGGGTATTCCTCCCGATCAA 248102 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || |||||||||| ||| ||||| || || || || | || || || |||||||||| Sbjct 248101 CAGCGACTCATCTTCGCTGGCAAGCAACTTGAAGATGGCCGAACTCTTTCCGACTACAAC 248042 Query 40870 ATCCAGAAGGA 40880 || |||||||| Sbjct 248041 ATTCAGAAGGA 248031 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515211903208080