Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001703455
.1_202016-08-10] 1,133 sequences; 48,659,641 total letters
Query= NC_002593.1
Length=100999
Score E
Sequences producing significant alignments: (Bits) Value
seq207 107 1e-18
seq168 96.9 2e-15
seq172 89.7 3e-13
>seq207
Length=801058
Score = 107 bits (118), Expect = 1e-18
Identities = 162/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| ||||| || | || || ||||| | ||| || ||||| |||||||||||| |
Sbjct 247767 CCACCGCGAAGTCGGAGAACGAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAGTCGCTC 247826
Query 34223 -AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281
|| || || | || ||||||||||| || ||||| || || ||||| || || |||
Sbjct 247827 AAGGTG-CGACCATCTTCCAACTGCTTACCAGCGAAGATAAGACGCTGTTGATCAGGGGG 247885
Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341
| | ||||||||| ||||| ||| | | | | || | || | || |||||
Sbjct 247886 AATACCCTCCTTGTCCTGAATCTTGCTCTTCACGTTGTCGATAGTGTCACTGGACTCGAC 247945
Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|| | |||||||| || ||||||||||| |||||||| ||||||||
Sbjct 247946 CTCAAGGGTGATGGTCTTTCCGGTGAGAGTCTTCACAAAAATCTGCAT 247993
Score = 107 bits (118), Expect = 1e-18
Identities = 151/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237
|| |||| ||| | |||| ||| ||||| |||||||||||||| || ||| | ||
Sbjct 248010 AGAACCAAGTGGAGAGTAGATTCCTTCTGAATGTTGTAGTCGGAAAGAGTTCGGCCATCT 248069
Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297
|| | |||||||| ||||| ||||| ||||| || ||| || | | |||||||||
Sbjct 248070 TCAAGTTGCTTGCCAGCGAAGATGAGTCGCTGTTGATCGGGAGGAATACCCTCCTTGTCC 248129
Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357
||||| ||| | || | || | ||||| || ||||| |||| || |||||
Sbjct 248130 TGGATCTTGCTCTTCACATTATCAATGGTATCGGATGACTCGACTTCCAGAGTAATGGTC 248189
Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|| || ||||| || || || ||||| |||||
Sbjct 248190 TTTCCAGTGAGGGTCTTGACGAAGATTTGCAT 248221
Score = 107 bits (118), Expect = 1e-18
Identities = 151/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237
|| || ||||| | ||| || ||||| |||||||| || || || ||| ||||
Sbjct 248520 AGAACAAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGAGAGAGTGCGGCCGTCC 248579
Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297
|| | ||||||||| |||||||| | || ||||||||| ||| | || |||||||||
Sbjct 248580 TCAAGCTGCTTGCCGGCGAAAATCAAGCGTTGCTGGTCGGGGGGAATGCCCTCCTTGTCC 248639
Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357
||||| ||| | || | | || | |||| || || || || | ||||||||
Sbjct 248640 TGAATCTTGGACTTGACATTGTCGATAGTGTCGGAAGACTCAACCTCGAGGGTGATGGTC 248699
Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|||||||| | || || || |||||||||||
Sbjct 248700 TTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 248731
Score = 100 bits (110), Expect = 2e-16
Identities = 130/180 (72%), Gaps = 0/180 (0%)
Strand=Plus/Plus
Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257
||| ||||| ||||||||||||| || ||| |||| || | ||||| || || ||
Sbjct 248258 TTCCTTCTGAATGTTGTAGTCGGCAAGGGTTCGGCCGTCTTCGAGTTGCTTTCCAGCAAA 248317
Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317
|| || ||||||||||| || | || ||||||||| |||||| ||| | ||
Sbjct 248318 GATCAGGCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGAATCTTTGACTTAACATT 248377
Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377
| | || | ||||| ||| ||||| || | |||||||| ||||| ||||| || || ||
Sbjct 248378 GTCGATGGTATCGGACGACTCGACCTCAAGAGTGATGGTCTTGCCAGTGAGGGTCTTGAC 248437
>seq168
Length=541571
Score = 96.9 bits (106), Expect = 2e-15
Identities = 149/213 (70%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237
|| |||||||| | || || ||||| |||||||||||| ||| || | ||
Sbjct 348647 AGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGTCCATCC 348706
Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297
|| | ||||||||| || || ||||| ||||||||||| ||| | || |||||||||
Sbjct 348707 TCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 348766
Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357
||||| ||| | || | | || | |||| || || || || | ||||| ||
Sbjct 348767 TGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTC 348826
Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390
|| || ||||| || || || || |||||||||
Sbjct 348827 TTCCCCGTGAGGGTCTTGACGAAAATCTGCATC 348859
>seq172
Length=381824
Score = 89.7 bits (98), Expect = 3e-13
Identities = 127/179 (71%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 34202 TTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATG 34261
||||| |||||||||||||| || ||| | || || | |||||| || ||||| ||
Sbjct 230232 TTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCGAGCTGCTTACCAGCGAAGATC 230291
Query 34262 AGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCT 34321
|| ||||| ||||| ||| | || ||||||||| ||||| ||| | || | |
Sbjct 230292 AGTCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 230351
Query 34322 ATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAA 34380
|| | || | || ||||| || | |||||||| ||||| || || || ||||| ||
Sbjct 230352 ATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 230410
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 323067538880480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |