Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001703455 .1_202016-08-10] 1,133 sequences; 48,659,641 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq284 201 2e-46 seq204 109 8e-19 >seq284 Length=101724 Score = 201 bits (222), Expect = 2e-46 Identities = 600/914 (66%), Gaps = 20/914 (2%) Strand=Plus/Minus Query 79666 ATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTT 79725 || ||||||||||| ||||| | ||||| || | || | ||| || ||||| Sbjct 51759 ATAATTTCAGTGCACAGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTTGCTCTTG 51700 Query 79726 TTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATA 79785 ||| || |||||||| || || ||||| || | || || ||| |||| | || | | Sbjct 51699 CGGTTGCAGGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCCTCAAGA 51640 Query 79786 ATCGCTTTCCAGACGACTC-GAGCCTTTATTATAGACTTGTATCTCTTTTCT--CTT-TC 79841 || || | ||| | | || ||||||| || || |||| | ||| | ||| || Sbjct 51639 ATGGCGTACCAAA-GTTTCTGAGCCTTGAT---AGTCTTGCGACCCTTGCCCTCCTTCTC 51584 Query 79842 GTATTGT--GTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACAT 79899 ||| | | ||| | | | |||||||| ||||| | ||| | | ||||| || Sbjct 51583 GTACTTTTCGTACAGAGCC--TCGAACTCCTCTCCGTAGCAGTCGGCGAGGCCAGGGCAC 51526 Query 79900 TCGTCAGGACACATCAACGACCACTCTCCATCATCCTTT--ACTCGTTTCATAAAGAGAT 79957 |||| || ||||||| || ||| || || | || ||| || || ||||| || |||| Sbjct 51525 TCGTTGGGGCACATCAGCGTCCAGTCACCGT--TCTTTTCAACACGCTTCATGAAAAGAT 51468 Query 79958 CAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCT 80017 |||| |||||||| || | || || || | || | |||||| || || |||| Sbjct 51467 CAGGGATCCAAAGGGCGAGGAAAAGGTCACGGGCACGGACCTCCTCTTTACCGTGGTTCT 51408 Query 80018 TTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAA 80077 | ||||| |||||| | | | |||||| ||||| || || | ||| ||||| | | Sbjct 51407 TACGGAGATCAAGGAACTCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAG 51348 Query 80078 CTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCA 80137 | || ||||| ||||| || ||||| || | || | ||| ||||| || | || | | Sbjct 51347 CACCGGGTCGCTTGTTGCCACCCTGGTCGACATAGCGAGCAGTGTTGTTGAAGACACGAA 51288 Query 80138 ACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCAC 80197 ||| |||| || ||| || |||||||| ||||| |||| ||| ||| ||| | |||| Sbjct 51287 GCATAGGAACAACACCGTTCGATGTACCGTTGGTACCGGCGATGTAGGAGCCAGTAGCAC 51228 Query 80198 GAATAT--TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCG 80255 | ||| | | || | |||| || || || ||||| || ||||| | || || Sbjct 51227 GGATACGGTGCACGTTCA--GACCAATACCACCAGCCATCTTGGAGATCATGGCACAGGT 51170 Query 80256 TTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCT 80315 || | ||||| ||||| ||||| || || || || |||| | | | || || Sbjct 51169 CTTGAGAGTATCGTAGATTCCCTCAATACTGTCGTCCTTCATATCGACCAAGAAGCAAGA 51110 Query 80316 AGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCA 80375 |||| |||| | || || || || || || | || |||||||| || || || | Sbjct 51109 TGACAATTGGGGCTGAGGGGTGCCGGCGTTGAAGAGCGTGGGAGAAGCATGTGTGAAGAA 51050 Query 80376 TTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCC 80435 ||| |||| || ||||| ||||| | || || ||||| ||| || Sbjct 51049 TTTGCTGGACATCAGGTTGTATGTCTCCAAGACTCGCTCGATATCATCACCCCAAATACC 50990 Query 80436 TACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAA 80495 || | |||||||| | |||||||||||| | || || ||||| | || || | Sbjct 50989 AACAGACACACGCATGATCATGTGCTGAGGGCGCTCGACAATCTTACCGTCAATCTTGAG 50930 Query 80496 CAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTA 80555 | ||| ||| |||||||| || || ||||| || | |||| || || || || || Sbjct 50929 GAGGTATGATCGCTCCAAAGTCTTGAAGCCAAAGTATTGGTATTGGAAATCGCGGTCATA 50870 Query 80556 AATAATAACCGAGT 80569 | ||| | |||| Sbjct 50869 GACAATGGCAGAGT 50856 >seq204 Length=536571 Score = 109 bits (120), Expect = 8e-19 Identities = 353/544 (65%), Gaps = 8/544 (1%) Strand=Plus/Plus Query 49974 GTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 50033 ||| |||||||| || | | || || |||||||| || || || |||||||| || || Sbjct 425521 GTGAAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCGGGCATGAGACC 425580 Query 50034 ACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGC 50093 |||||| || ||||| || || || || || | ||| |||||||| || || || || Sbjct 425581 ACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGCACCACTGAAGAAGATACCCTCAACAGC 425640 Query 50094 GGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGC---TGTCATGTATCCA-CTTTTGAG 50149 || |||||||| || | || || | || | | || || ||||| | || | Sbjct 425641 AGCGAAGGCAACGAGACGCTGGGCAAAGGAGGAGTCCTTATCCTGGATCCATCGGATG-G 425699 Query 50150 CCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttt 50209 |||| |||||||||||| | || || || || || ||||| |||||||| ||| || Sbjct 425700 CCCAGTCGGCCTTCTTTCGGATGCAGGGAATGGTCTCAATGGCGTTAAAGAGGTAGGTTC 425759 Query 50210 tttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGT 50269 | || || | || || || || | || || | || || || |||| Sbjct 425760 GCTGGGCGGGCTCCTTGATGTAGGTGTCAATGAGCAGGGAGTAGGTCTCGGAGTGGATGT 425819 Query 50270 TTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTAC 50329 | || || ||||| || |||||||| || | |||||||| ||||| || || || Sbjct 425820 TCTCCATCATGATCTGGAAGCCGTAGAAGCAACGAGCCTCGGGGATCTGGACCTCGCCAC 425879 Query 50330 AAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATA 50389 ||||| || | | || || || || || || ||| ||| || || || || | | Sbjct 425880 TGAATCGCTCGACGAGGTTCTCGTTGACAATACCATCAGAGGCAGCGAAGAAAGCAAGGA 425939 Query 50390 CATGTTTTATAAAATGTTTTTCGTTGGGTGTTA---GTTTATTCCAATCATTGATATCTT 50446 || | || | || | || || | | || ||||| || | || ||| | Sbjct 425940 TGTGAGAGACGAAGAACTGCTCATCGGCAGTCAGGCGGTTGTTCCAGTCGTGGAGATCCT 425999 Query 50447 TAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCC 50506 | || | ||| | || || | ||||| || || ||||| ||||| || ||||| | || Sbjct 426000 TGGAAAGATCAATCTCCTCAGCAGTCCAGAAGGAAGCCTCAGCCTTCTTGTACATTTGCC 426059 Query 50507 AGAT 50510 | || Sbjct 426060 AAAT 426063 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718258627518120