Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001703455
.1_202016-08-10] 1,133 sequences; 48,659,641 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq204 140 7e-28
seq199 113 9e-20
seq425 107 4e-18
seq284 107 4e-18
seq370 105 1e-17
>seq204
Length=536571
Score = 140 bits (154), Expect = 7e-28
Identities = 386/586 (66%), Gaps = 17/586 (3%)
Strand=Plus/Plus
Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622
|||||||| || | |||||| | || ||||| ||||||||||||||||||||| |||
Sbjct 425240 TCGAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTG 425299
Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682
|| ||||| ||| | |||||| || || | || || || || || ||||| |
Sbjct 425300 GCCTTGTAAACCTTCTCGTTGCCAAGCGCGACAAGGAGACGATCAGCGACGAACTCAATG 425359
Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742
||||| ||| || |||||||||||||| | | ||| |||| |||||| || |
Sbjct 425360 TACTGCTTCATGAGGTCAGAGTTCATGCCGAGAAGGGCACAGGGAAGAGCCTCAGTGAGG 425419
Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCT---TCACCTG--TGCCAG-- 251795
|| |||| || ||| || || || | || ||| ||| ||| ||| |
Sbjct 425420 AACTCCTGCTCAATGGTGACGGCGTCAGTAATGATATCCTGGATCATCTGCTTGCTGGCA 425479
Query 251796 AGACAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTC 251855
||| |||| || | |||| ||||| | |||| | ||| ||||||||
Sbjct 425480 CGAC-CCTTG------AGGTGGGAGTGGAGGAGGCAGGCAAAGTCAGTGTGAAGACCCTC 425532
Query 251856 GTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAG 251915
|| ||| ||||| ||||||||| | ||| || ||||| | ||||| ||| ||||
Sbjct 425533 ATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCGGGCATGAGACCACGCTTCTTGAG 425592
Query 251916 CCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAAC 251975
||||||||| | | |||| ||| ||| | | |||||| ||| | | |||||
Sbjct 425593 CCAGAAGATAGAGGCGAAGGCACCACTGAAGAAGATACCCTCAACAGCAGCGAAGGCAAC 425652
Query 251976 AAGGCGCTCAGCAAACGACTTGTCCTGCGACAAGA-ACTTCTG--TGCCCATGCTGCCTT 252032
|| |||| ||||| || ||||| | || | || | ||||| | |||||
Sbjct 425653 GAGACGCTGGGCAAAGGAGGAGTCCTTATCCTGGATCCATCGGATGGCCCAGTCGGCCTT 425712
Query 252033 CTTTCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCGTC 252092
||||| | ||| || || || || || | |||||| || | |||| ||| ||
Sbjct 425713 CTTTCGGATGCAGGGAATGGTCTCAATGGCGTTAAAGAGGTAGGTTCGCTGGGCGGGCTC 425772
Query 252093 CTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATG 252138
|| |||| | |||| || || ||||| |||| || ||||||
Sbjct 425773 CTTGATGTAGGTGTCAATGAGCAGGGAGTAGGTCTCGGAGTGGATG 425818
>seq199
Length=220853
Score = 113 bits (124), Expect = 9e-20
Identities = 216/313 (69%), Gaps = 8/313 (3%)
Strand=Plus/Plus
Query 87606 CTTTGTCATCTTCGATGCTGACTTCTGCCCGCGCAAGGACTTCATCACGGAAATTAT-GC 87664
|||||| || |||||||| ||||||||||| ||| ||||| ||| ||| | | |
Sbjct 173892 CTTTGTGATTTTCGATGCAGACTTCTGCCCTCGCCCTGACTTTGTCAAGGAGCTCGTTGT 173951
Query 87665 C--ATACTTCAACTATGACAAATCCATCGCCATCGTCCAGACCCCCCAGTTCTTTGAGGT 87722
| | || || | |||||||| || || ||||| ||| |||| |||| || | |
Sbjct 173952 CGAACACCTCGCCGATGACAAA---ATTGCTATCGTGCAGTCCCCTCAGTGGTTCC-GTT 174007
Query 87723 GCGT-CCAGACCAGACTTGGGTAGAGCGTGCTGCAGGTTCTGTCCAGGAACTGTTCTACC 87781
| || || ||||||||||| |||| | ||| ||| || ||||||||||||||||
Sbjct 174008 CCACACCCGAGCAGACTTGGGTTGAGCAGGGTGCTGGTGCTACGCAGGAACTGTTCTACC 174067
Query 87782 GCTTCATCCAGGTGTCTCGCGAATCATTTGGCGCTGCAGTGTGCGTGGGTACTTGTGCTA 87841
|| |||| ||||| || || ||||||||| || | || || || || ||| |
Sbjct 174068 GCGTCATACAGGTTAACCGAGATACATTTGGCGGCGCCATCTGTGTCGGCACCAATGCCA 174127
Query 87842 TGTATCGTCGCGAGGCCCTGGTGCCATTTGGCGGCACTGCTGAAATCGGTTTCAGCGAGG 87901
||||||| |||| ||| ||| |||| || || ||||| || || | ||||
Sbjct 174128 TGTATCGACGCGCTGCCTTGGAAGAGGTTGGAGGAACGGCTGATATTGGACACTCAGAGG 174187
Query 87902 ATGTCCACACCGG 87914
|||| || || ||
Sbjct 174188 ATGTGCATACAGG 174200
>seq425
Length=496442
Score = 107 bits (118), Expect = 4e-18
Identities = 159/223 (71%), Gaps = 2/223 (1%)
Strand=Plus/Plus
Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404
||||||||||| || ||||| ||||| || || || |||| |||||||| || |||
Sbjct 179201 GGTGAGGATCTTTGCAACTGTACCTTCTCTCTTGCCTACGGTGCCAAGATTCTTCTCAAC 179260
Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464
|| | |||| |||||||||| | || || ||||| ||||||||| || |
Sbjct 179261 CAGACTCACCTCCGTCTCAAGCGTGGTCAGCGTTACGGTCTTTGCGGTCCCAACGGTTCC 179320
Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524
|| ||| |||||| ||||||||||| |||| ||| | || || || ||||| |||
Sbjct 179321 GGAAAGTCCACTCTCATGCGCGCCATCAACAACGAGCAGGTTGAGGGTTTCCCTAA-GCA 179379
Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTCC 279566
||||| | ||| || | || ||||||||| | ||||||
Sbjct 179380 GAGCGAGGTCAAGACTGTCTTCGTCGAGCACGACCTTGACTCC 179422
Score = 102 bits (112), Expect = 2e-16
Identities = 168/240 (70%), Gaps = 2/240 (1%)
Strand=Plus/Plus
Query 280152 TCTATGAACTCACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATC 280211
||| || ||| || |||| ||||| || ||||| ||||| || |||||||| || |||
Sbjct 180008 TCTCTGGGCTCCCGTATTGCCGTCATCGGTCCCAACGGTGCTGGCAAGTCTACTCTGATC 180067
Query 280212 AAAGTCCTGACTGGCGAGACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATG 280271
|| || || ||||| ||| | ||||| |||| | | |||| |||||
Sbjct 180068 AACGTGCTCACTGGTGAGCTCATCCCCACTCAGGGTGAGATCTACCAGCACGAGAACATC 180127
Query 280272 CGGATGGCTTACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACT 280331
|| || || ||| | |||||||||||| |||||||| ||||| || |||| ||||
Sbjct 180128 CGTATCGCCTACATTAAGCAGCACGCTTTCGCTCACATCGATAACCATCTCGACAAGACT 180187
Query 280332 CCTAACCAATACATTCAGTGGCGCTATGCA-AGTGGGCAGGATCTGGAGTCGGTGGATCG 280390
||| | | ||||| |||||||| | | || | ||| |||||| ||| | |||| ||
Sbjct 180188 CCTTCCGAGTACATCCAGTGGCGAT-TCCAGACTGGTGAGGATCGTGAGACCATGGACCG 180246
>seq284
Length=101724
Score = 107 bits (118), Expect = 4e-18
Identities = 450/698 (64%), Gaps = 13/698 (2%)
Strand=Plus/Minus
Query 293115 CTGCGTCTGATCGACAAAGGCACCACGATCAGCAGCGAGGTCAATCAC-TGTCTTCATAG 293173
||| | |||||| | |||||||| ||||||||||| | | || || || | | ||
Sbjct 52582 CTGGGACTGATCAATGAAGGCACCTCGATCAGCAGCCATCTGAACGACCTGGCG-CTGAG 52524
Query 293174 AGATCTCCCACGATGTCTTGTACACTGCCTTGACATCAGGATGAATGCCAATAACCTTCT 293233
|||||||||| ||||| |||| ||||||||||| | | | ||| || ||||
Sbjct 52523 AGATCTCCCAAACGGTCTTATACAGAGCCTTGACATCGGCAGGGATGTTGGGAATGTTCT 52464
Query 293234 GGATAGACCCTCCGTTGGCAATAATCTGGTTCTTCATTGTCTCGGACCA-AGTCCCACGA 293292
| || || || | ||||| || |||||||||| | |||||||| || |||| |
Sbjct 52463 GAATGGAACCATTCTCAGCAATGATGCGGTTCTTCATAGCATCGGACCACAGACCCATG- 52405
Query 293293 GCAATGAGCTCGCGGACAAGGTAAGAGTTGACAACGGGGAACTCACCAGCGAGAGTGCGA 293352
| | || || || || | | ||||||||| ||||||||||||||||| ||
Sbjct 52404 TCGACAAGGTCCTTGAGCAGCCAGGGGTTGACAACCTGGAACTCACCAGCGAGAACACGT 52345
Query 293353 CGGCTGTAAATGTTCGAAGTGATGGGTTCGGCTGCCTCAACAGACCCGCAAATCTGAGCA 293412
|| ||| ||||| || ||| ||| ||| ||| || |||||| |
Sbjct 52344 CGTTGGTAGATGTTGGAGGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGGGAG 52285
Query 293413 GTAGATGCGGTAGGCATAAGAGCAGTCGTCAGAGAGTTCCTCACACCCT---TCTTGACA 293469
||| || ||||||||| ||||| |||| ||| | | || | |||||||
Sbjct 52284 GTACTGGCAGTAGGCATAGGAGCAAGGAGCAGACTGTTACGGATGCCGTGTGTCTTGACT 52225
Query 293470 CGCGATTCGAGACCCGCCCAGT-CCAGAGCAGTCTGA-GGTGTAACACCCCAGAGATGAT 293527
| | ||| | |||||| |||||| ||| || || | || ||| | |
Sbjct 52224 TCCTCTCGAAGAGTCTCCCAGTCCCAGAG--GTCAGAGGGCTTGACGTTCCACATGTCGA 52167
Query 293528 ACTGCATGATACCCTTGCTGGCAGGAGACCCCTCAAAGGTGGGATGGGGGCCATGCTCAT 293587
|||| | |||||||| ||| || || || | ||||| | | ||| || | ||| |
Sbjct 52166 ACTGGAGGATACCCTCAGAGGCGGGGGAACCTTTGAAGGTAGAGTAGGGACCCTCCTCCT 52107
Query 293588 CAGAGAGCTCGCA-AGATGCCTCAACAGCAGCAAAGTAAATGTGCTCGAAGATCTCACGG 293646
|| |||| ||| || || | ||||| ||||||| ||||||||||| |
Sbjct 52106 TAGCCAGCT-GCACGGAGGCAGTGAGGGCAGCGTGGTAAATGGTCTCGAAGATCTGCTTG 52048
Query 293647 TTGAGCTTGCGAGCCTGCTCAGAGTCAAACGGCATCTTCAGCTGGAAGAACACATCCTGC 293706
||||||| ||||||| | || || || ||||| ||| | ||| ||||
Sbjct 52047 TTGAGCTCACGAGCCTCCGGTGACTCGAAGGGCATGCGCAGAGCAAGGAAAGCATCGGCA 51988
Query 293707 AGACCCTGTACACCTACACCAACGGGGCGACGACGCTTGTTGCTCGTCTCTGCCTCGGGA 293766
|| ||||| ||||| | ||||| ||| || | ||| |||| || | ||||| |
Sbjct 51987 AGGCCCTGAACACCAAGACCAATGGGTCGGTGGCGCATGTTACTGTTGCGAGCCTCCTGG 51928
Query 293767 ACCGCATATGCCATCACATCAATGCTCCTGTCCAGGTT 293804
|| | || ||||||| ||| || ||| ||||||
Sbjct 51927 ACAGGGTAGTGGTTCACATCGATGATCTTGTTCAGGTT 51890
>seq370
Length=2000702
Score = 105 bits (116), Expect = 1e-17
Identities = 162/231 (70%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 218580 CGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCGGAA 218639
|||| |||||||| ||||||| ||||||||| || | | |||| |||||| | ||
Sbjct 220665 CGTGCTGGATGGCTTCAAGCCTGGTCAGCGTAAGGTCATATATGCCTGCTTCAAGAGAAA 220724
Query 218640 CCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTA 218699
|||||| |||| | ||||||| | | || |||||||||| || || ||| |||
Sbjct 220725 CCTGGTCAAAGATAAGAAGGTCGTTGAATTGGCTGGTTATGTCTCTGAGCAGACTGCCTA 220784
Query 218700 CCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTGGG 218759
|||||||||||| ||| ||| || | || | ||| |||| ||| ||| || ||
Sbjct 220785 CCATCACGGTGAACAGTCTCTCCAACAGACTATCATTGGCCTGGCCCAGAACTTCGTCGG 220844
Query 218760 CAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCT 218810
|||||||| |||| ||| |||| || | || |||||||| ||
Sbjct 220845 TTCAAACAACATCAACTGTCTGGAACCCAGTGGAAACTTCGGTTCTCGACT 220895
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027821879342853
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