Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001703455 .1_202016-08-10] 1,133 sequences; 48,659,641 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq204 140 7e-28 seq199 113 9e-20 seq425 107 4e-18 seq284 107 4e-18 seq370 105 1e-17 >seq204 Length=536571 Score = 140 bits (154), Expect = 7e-28 Identities = 386/586 (66%), Gaps = 17/586 (3%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||| | || ||||| ||||||||||||||||||||| ||| Sbjct 425240 TCGAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTG 425299 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 || ||||| ||| | |||||| || || | || || || || || ||||| | Sbjct 425300 GCCTTGTAAACCTTCTCGTTGCCAAGCGCGACAAGGAGACGATCAGCGACGAACTCAATG 425359 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| ||| || |||||||||||||| | | ||| |||| |||||| || | Sbjct 425360 TACTGCTTCATGAGGTCAGAGTTCATGCCGAGAAGGGCACAGGGAAGAGCCTCAGTGAGG 425419 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCT---TCACCTG--TGCCAG-- 251795 || |||| || ||| || || || | || ||| ||| ||| ||| | Sbjct 425420 AACTCCTGCTCAATGGTGACGGCGTCAGTAATGATATCCTGGATCATCTGCTTGCTGGCA 425479 Query 251796 AGACAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTC 251855 ||| |||| || | |||| ||||| | |||| | ||| |||||||| Sbjct 425480 CGAC-CCTTG------AGGTGGGAGTGGAGGAGGCAGGCAAAGTCAGTGTGAAGACCCTC 425532 Query 251856 GTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAG 251915 || ||| ||||| ||||||||| | ||| || ||||| | ||||| ||| |||| Sbjct 425533 ATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCGGGCATGAGACCACGCTTCTTGAG 425592 Query 251916 CCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAAC 251975 ||||||||| | | |||| ||| ||| | | |||||| ||| | | ||||| Sbjct 425593 CCAGAAGATAGAGGCGAAGGCACCACTGAAGAAGATACCCTCAACAGCAGCGAAGGCAAC 425652 Query 251976 AAGGCGCTCAGCAAACGACTTGTCCTGCGACAAGA-ACTTCTG--TGCCCATGCTGCCTT 252032 || |||| ||||| || ||||| | || | || | ||||| | ||||| Sbjct 425653 GAGACGCTGGGCAAAGGAGGAGTCCTTATCCTGGATCCATCGGATGGCCCAGTCGGCCTT 425712 Query 252033 CTTTCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCGTC 252092 ||||| | ||| || || || || || | |||||| || | |||| ||| || Sbjct 425713 CTTTCGGATGCAGGGAATGGTCTCAATGGCGTTAAAGAGGTAGGTTCGCTGGGCGGGCTC 425772 Query 252093 CTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATG 252138 || |||| | |||| || || ||||| |||| || |||||| Sbjct 425773 CTTGATGTAGGTGTCAATGAGCAGGGAGTAGGTCTCGGAGTGGATG 425818 >seq199 Length=220853 Score = 113 bits (124), Expect = 9e-20 Identities = 216/313 (69%), Gaps = 8/313 (3%) Strand=Plus/Plus Query 87606 CTTTGTCATCTTCGATGCTGACTTCTGCCCGCGCAAGGACTTCATCACGGAAATTAT-GC 87664 |||||| || |||||||| ||||||||||| ||| ||||| ||| ||| | | | Sbjct 173892 CTTTGTGATTTTCGATGCAGACTTCTGCCCTCGCCCTGACTTTGTCAAGGAGCTCGTTGT 173951 Query 87665 C--ATACTTCAACTATGACAAATCCATCGCCATCGTCCAGACCCCCCAGTTCTTTGAGGT 87722 | | || || | |||||||| || || ||||| ||| |||| |||| || | | Sbjct 173952 CGAACACCTCGCCGATGACAAA---ATTGCTATCGTGCAGTCCCCTCAGTGGTTCC-GTT 174007 Query 87723 GCGT-CCAGACCAGACTTGGGTAGAGCGTGCTGCAGGTTCTGTCCAGGAACTGTTCTACC 87781 | || || ||||||||||| |||| | ||| ||| || |||||||||||||||| Sbjct 174008 CCACACCCGAGCAGACTTGGGTTGAGCAGGGTGCTGGTGCTACGCAGGAACTGTTCTACC 174067 Query 87782 GCTTCATCCAGGTGTCTCGCGAATCATTTGGCGCTGCAGTGTGCGTGGGTACTTGTGCTA 87841 || |||| ||||| || || ||||||||| || | || || || || ||| | Sbjct 174068 GCGTCATACAGGTTAACCGAGATACATTTGGCGGCGCCATCTGTGTCGGCACCAATGCCA 174127 Query 87842 TGTATCGTCGCGAGGCCCTGGTGCCATTTGGCGGCACTGCTGAAATCGGTTTCAGCGAGG 87901 ||||||| |||| ||| ||| |||| || || ||||| || || | |||| Sbjct 174128 TGTATCGACGCGCTGCCTTGGAAGAGGTTGGAGGAACGGCTGATATTGGACACTCAGAGG 174187 Query 87902 ATGTCCACACCGG 87914 |||| || || || Sbjct 174188 ATGTGCATACAGG 174200 >seq425 Length=496442 Score = 107 bits (118), Expect = 4e-18 Identities = 159/223 (71%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 ||||||||||| || ||||| ||||| || || || |||| |||||||| || ||| Sbjct 179201 GGTGAGGATCTTTGCAACTGTACCTTCTCTCTTGCCTACGGTGCCAAGATTCTTCTCAAC 179260 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 || | |||| |||||||||| | || || ||||| ||||||||| || | Sbjct 179261 CAGACTCACCTCCGTCTCAAGCGTGGTCAGCGTTACGGTCTTTGCGGTCCCAACGGTTCC 179320 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524 || ||| |||||| ||||||||||| |||| ||| | || || || ||||| ||| Sbjct 179321 GGAAAGTCCACTCTCATGCGCGCCATCAACAACGAGCAGGTTGAGGGTTTCCCTAA-GCA 179379 Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTCC 279566 ||||| | ||| || | || ||||||||| | |||||| Sbjct 179380 GAGCGAGGTCAAGACTGTCTTCGTCGAGCACGACCTTGACTCC 179422 Score = 102 bits (112), Expect = 2e-16 Identities = 168/240 (70%), Gaps = 2/240 (1%) Strand=Plus/Plus Query 280152 TCTATGAACTCACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATC 280211 ||| || ||| || |||| ||||| || ||||| ||||| || |||||||| || ||| Sbjct 180008 TCTCTGGGCTCCCGTATTGCCGTCATCGGTCCCAACGGTGCTGGCAAGTCTACTCTGATC 180067 Query 280212 AAAGTCCTGACTGGCGAGACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATG 280271 || || || ||||| ||| | ||||| |||| | | |||| ||||| Sbjct 180068 AACGTGCTCACTGGTGAGCTCATCCCCACTCAGGGTGAGATCTACCAGCACGAGAACATC 180127 Query 280272 CGGATGGCTTACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACT 280331 || || || ||| | |||||||||||| |||||||| ||||| || |||| |||| Sbjct 180128 CGTATCGCCTACATTAAGCAGCACGCTTTCGCTCACATCGATAACCATCTCGACAAGACT 180187 Query 280332 CCTAACCAATACATTCAGTGGCGCTATGCA-AGTGGGCAGGATCTGGAGTCGGTGGATCG 280390 ||| | | ||||| |||||||| | | || | ||| |||||| ||| | |||| || Sbjct 180188 CCTTCCGAGTACATCCAGTGGCGAT-TCCAGACTGGTGAGGATCGTGAGACCATGGACCG 180246 >seq284 Length=101724 Score = 107 bits (118), Expect = 4e-18 Identities = 450/698 (64%), Gaps = 13/698 (2%) Strand=Plus/Minus Query 293115 CTGCGTCTGATCGACAAAGGCACCACGATCAGCAGCGAGGTCAATCAC-TGTCTTCATAG 293173 ||| | |||||| | |||||||| ||||||||||| | | || || || | | || Sbjct 52582 CTGGGACTGATCAATGAAGGCACCTCGATCAGCAGCCATCTGAACGACCTGGCG-CTGAG 52524 Query 293174 AGATCTCCCACGATGTCTTGTACACTGCCTTGACATCAGGATGAATGCCAATAACCTTCT 293233 |||||||||| ||||| |||| ||||||||||| | | | ||| || |||| Sbjct 52523 AGATCTCCCAAACGGTCTTATACAGAGCCTTGACATCGGCAGGGATGTTGGGAATGTTCT 52464 Query 293234 GGATAGACCCTCCGTTGGCAATAATCTGGTTCTTCATTGTCTCGGACCA-AGTCCCACGA 293292 | || || || | ||||| || |||||||||| | |||||||| || |||| | Sbjct 52463 GAATGGAACCATTCTCAGCAATGATGCGGTTCTTCATAGCATCGGACCACAGACCCATG- 52405 Query 293293 GCAATGAGCTCGCGGACAAGGTAAGAGTTGACAACGGGGAACTCACCAGCGAGAGTGCGA 293352 | | || || || || | | ||||||||| ||||||||||||||||| || Sbjct 52404 TCGACAAGGTCCTTGAGCAGCCAGGGGTTGACAACCTGGAACTCACCAGCGAGAACACGT 52345 Query 293353 CGGCTGTAAATGTTCGAAGTGATGGGTTCGGCTGCCTCAACAGACCCGCAAATCTGAGCA 293412 || ||| ||||| || ||| ||| ||| ||| || |||||| | Sbjct 52344 CGTTGGTAGATGTTGGAGGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGGGAG 52285 Query 293413 GTAGATGCGGTAGGCATAAGAGCAGTCGTCAGAGAGTTCCTCACACCCT---TCTTGACA 293469 ||| || ||||||||| ||||| |||| ||| | | || | ||||||| Sbjct 52284 GTACTGGCAGTAGGCATAGGAGCAAGGAGCAGACTGTTACGGATGCCGTGTGTCTTGACT 52225 Query 293470 CGCGATTCGAGACCCGCCCAGT-CCAGAGCAGTCTGA-GGTGTAACACCCCAGAGATGAT 293527 | | ||| | |||||| |||||| ||| || || | || ||| | | Sbjct 52224 TCCTCTCGAAGAGTCTCCCAGTCCCAGAG--GTCAGAGGGCTTGACGTTCCACATGTCGA 52167 Query 293528 ACTGCATGATACCCTTGCTGGCAGGAGACCCCTCAAAGGTGGGATGGGGGCCATGCTCAT 293587 |||| | |||||||| ||| || || || | ||||| | | ||| || | ||| | Sbjct 52166 ACTGGAGGATACCCTCAGAGGCGGGGGAACCTTTGAAGGTAGAGTAGGGACCCTCCTCCT 52107 Query 293588 CAGAGAGCTCGCA-AGATGCCTCAACAGCAGCAAAGTAAATGTGCTCGAAGATCTCACGG 293646 || |||| ||| || || | ||||| ||||||| ||||||||||| | Sbjct 52106 TAGCCAGCT-GCACGGAGGCAGTGAGGGCAGCGTGGTAAATGGTCTCGAAGATCTGCTTG 52048 Query 293647 TTGAGCTTGCGAGCCTGCTCAGAGTCAAACGGCATCTTCAGCTGGAAGAACACATCCTGC 293706 ||||||| ||||||| | || || || ||||| ||| | ||| |||| Sbjct 52047 TTGAGCTCACGAGCCTCCGGTGACTCGAAGGGCATGCGCAGAGCAAGGAAAGCATCGGCA 51988 Query 293707 AGACCCTGTACACCTACACCAACGGGGCGACGACGCTTGTTGCTCGTCTCTGCCTCGGGA 293766 || ||||| ||||| | ||||| ||| || | ||| |||| || | ||||| | Sbjct 51987 AGGCCCTGAACACCAAGACCAATGGGTCGGTGGCGCATGTTACTGTTGCGAGCCTCCTGG 51928 Query 293767 ACCGCATATGCCATCACATCAATGCTCCTGTCCAGGTT 293804 || | || ||||||| ||| || ||| |||||| Sbjct 51927 ACAGGGTAGTGGTTCACATCGATGATCTTGTTCAGGTT 51890 >seq370 Length=2000702 Score = 105 bits (116), Expect = 1e-17 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 218580 CGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCGGAA 218639 |||| |||||||| ||||||| ||||||||| || | | |||| |||||| | || Sbjct 220665 CGTGCTGGATGGCTTCAAGCCTGGTCAGCGTAAGGTCATATATGCCTGCTTCAAGAGAAA 220724 Query 218640 CCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTA 218699 |||||| |||| | ||||||| | | || |||||||||| || || ||| ||| Sbjct 220725 CCTGGTCAAAGATAAGAAGGTCGTTGAATTGGCTGGTTATGTCTCTGAGCAGACTGCCTA 220784 Query 218700 CCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTGGG 218759 |||||||||||| ||| ||| || | || | ||| |||| ||| ||| || || Sbjct 220785 CCATCACGGTGAACAGTCTCTCCAACAGACTATCATTGGCCTGGCCCAGAACTTCGTCGG 220844 Query 218760 CAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCT 218810 |||||||| |||| ||| |||| || | || |||||||| || Sbjct 220845 TTCAAACAACATCAACTGTCTGGAACCCAGTGGAAACTTCGGTTCTCGACT 220895 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027821879342853