Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001703455
.1_202016-08-10] 1,133 sequences; 48,659,641 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq207 168 1e-36
seq168 167 4e-36
seq172 147 4e-30
seq199 127 4e-24
seq425 98.7 2e-15
seq159 86.0 1e-11
>seq207
Length=801058
Score = 168 bits (186), Expect = 1e-36
Identities = 176/231 (76%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || ||||| | || | ||| || |||||||| || || ||||| ||||| |||
Sbjct 248505 CCACCACGGAGGCGGAGAACAAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGAG 248564
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | || || || | |||||| |||||||| || | | ||| |||||||| |||
Sbjct 248565 AGAGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAAATCAAGCGTTGCTGGTCGGGGGGA 248624
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| |||||||| |||||||| | |||||| ||||| ||||| | || || ||
Sbjct 248625 ATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATAGTGTCGGAAGACTCAACC 248684
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465
|| | ||||||||| || || || | |||||||||||| |||||||| |||
Sbjct 248685 TCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCATGATG 248735
Score = 161 bits (178), Expect = 2e-34
Identities = 172/227 (76%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || ||||| || | |||||||| || || || || || || ||||| || |||||
Sbjct 247995 CCACCACGAAGACGGAGAACCAAGTGGAGAGTAGATTCCTTCTGAATGTTGTAGTCGGAA 248054
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | |||||||| | ||||| || ||||| ||||||| ||||| ||||| |||
Sbjct 248055 AGAGTTCGGCCATCTTCAAGTTGCTTGCCAGCGAAGATGAGTCGCTGTTGATCGGGAGGA 248114
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| || |||||||| || ||||| ||| || || ||||| || | ||| || |||
Sbjct 248115 ATACCCTCCTTGTCCTGGATCTTGCTCTTCACATTATCAATGGTATCGGATGACTCGACT 248174
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|||| || ||||| ||||| ||||||||||||||||| || |||||
Sbjct 248175 TCCAGAGTAATGGTCTTTCCAGTGAGGGTCTTGACGAAGATTTGCAT 248221
Score = 120 bits (132), Expect = 6e-22
Identities = 159/221 (72%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || ||||| | || | || || || || || || || ||||| || ||||
Sbjct 248223 CCACCACGGAGGCGGAGGACGAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCGGCA 248282
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | || ||||| | ||||| || || || || || | || ||||| || ||
Sbjct 248283 AGGGTTCGGCCGTCTTCGAGTTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGAGGG 248342
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| |||||||| |||||||||| ||| || |||||||| || | || || ||
Sbjct 248343 ATGCCCTCCTTGTCCTGAATCTTTGACTTAACATTGTCGATGGTATCGGACGACTCGACC 248402
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATAT 68455
|| | |||||||| || || |||||||||||||||| |||
Sbjct 248403 TCAAGAGTGATGGTCTTGCCAGTGAGGGTCTTGACGACTAT 248443
>seq168
Length=541571
Score = 167 bits (184), Expect = 4e-36
Identities = 173/227 (76%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || ||||| | |||| ||| || |||||||| || |||||||| || |||
Sbjct 348632 CCACCACGGAGGCGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTC 348691
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | ||||| || | |||||| || || || ||||||| || ||||| || ||
Sbjct 348692 AGGGTGCGTCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGG 348751
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| |||||||| || ||||| | |||||| ||||||||||| | || || ||
Sbjct 348752 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACC 348811
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | |||||| || || |||||||||||||||||||| ||||||||
Sbjct 348812 TCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 348858
>seq172
Length=381824
Score = 147 bits (162), Expect = 4e-30
Identities = 140/179 (78%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333
|| |||||||| || |||||||| || | ||||| || | |||||| || ||||| ||
Sbjct 230232 TTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCGAGCTGCTTACCAGCGAAGATC 230291
Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393
|||| |||||||| || |||||||| |||||||| || ||||| | |||||| |||
Sbjct 230292 AGTCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 230351
Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452
|||||||| | || || || || | ||||||||| || ||||| |||||||| |||||
Sbjct 230352 ATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 230410
>seq199
Length=220853
Score = 127 bits (140), Expect = 4e-24
Identities = 171/233 (73%), Gaps = 4/233 (2%)
Strand=Plus/Minus
Query 59378 GTCCCGACGCACACGGCGCCGCCAAAGGTGTCGCGAGAAACCTGGATGAAACGGTAGAAC 59437
|| ||||| || | |||||||||||| || || || |||||| |||| |||||||||
Sbjct 174119 GTGCCGACACAGATGGCGCCGCCAAATGTATCTCGGTTAACCTGTATGACGCGGTAGAAC 174060
Query 59438 AGTTCCTGGACGGATCCAGCAGCGCGCTCAACCCAAGTCTGGTCGGG-GCGAACCTCGAA 59496
|||||||| | |||||| | |||||||||||||||| ||||| | | | | |||
Sbjct 174059 AGTTCCTGCGTAGCACCAGCACCCTGCTCAACCCAAGTCTGCTCGGGTGTGGAAC-GGAA 174001
Query 59497 GAACTGGGGGGTCTGCACAATCGCGATCTTGCCGTCATGGGAAAAGTAGGGC-ATGATTT 59555
|||| |||| |||||| || || || ||| | || | || || | | | || |
Sbjct 174000 CCACTGAGGGGACTGCACGATAGCAATTTTGTCATC-GGCGAGGTGTTCGACAACGAGCT 173942
Query 59556 CCTTGAGGTAGTCAGGGCGCGGACAGAAGTCAGCATCGAAGATGGCAAAGAAG 59608
|||||| |||||||||| || |||||||| |||||||| || ||||| ||
Sbjct 173941 CCTTGACAAAGTCAGGGCGAGGGCAGAAGTCTGCATCGAAAATCACAAAGTAG 173889
>seq425
Length=496442
Score = 98.7 bits (108), Expect = 2e-15
Identities = 437/677 (65%), Gaps = 39/677 (6%)
Strand=Plus/Minus
Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040
|||||||||||||||| | || ||| |||| || ||||| || || || ||||||
Sbjct 180210 CGCCACTGGATGTACTCGGAAGGAGTCTTGTCGAGATGGTTATCGATGTGAGCGAAAGCG 180151
Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGT-CGG 225099
||||| | ||| || || || ||||| |||| | | ||| |||| ||
Sbjct 180150 TGCTGCTTAATGTAGGCGATACGGATGTTCTCGTGCTGGTAGATCTCACCCTGAGTGGGG 180091
Query 225100 TTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAAT 225159
|| | ||| || ||||| || ||||| || |||| |||||| ||||| ||||| || ||
Sbjct 180090 ATGAG-CTCACCAGTGAGCACGTTGATCAGAGTAGACTTGCCAGCACCGTTGGGACCGAT 180032
Query 225160 CACGCCAATCCGGGATGACATTGCAACCTGCGAGTTCACGT--TG---CTGAAGATCTCA 225214
||| |||| ||||| || | ||| || | || || |||| | | |
Sbjct 180031 GACGGCAATACGGGAGCCCAGAGAGCACTGGAAGGAGATGTCCTGGATCTGAGGCTTGGA 179972
Query 225215 GG-GCCAGTTTGGTAAGCAAAGGCCA------CGCCACGCAGCTTCATGATGGCACGGTC 225267
|| |||| |||| |||| || | |||| || ||||| | |
Sbjct 179971 GGTACCAG---GGTACTGGAAGGACATGTTGGTGGCACGGAG------AATGGCCTTGGC 179921
Query 225268 CTTGGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCGTC 225327
||||| | | |||||| ||||| |||||||| ||||| ||| || | | ||
Sbjct 179920 CTTGGTCTTGACACCCTCGAGGAAACCGGGCTCAGGGAAAGTGAACTCCATCTCGGACTC 179861
Query 225328 CTTCAGGTCGTAGTAAGA---TGCAGCCTCGGGTCGCTTTGCCACGAAAGCAGACAGGTT 225384
|| ||||||||||| |||| |||| || || ||||| |||| ||||||
Sbjct 179860 ACCAAGCTCGTAGTAAGACTTGGCAG--AGGGGTTGC-GGGCGACGAAGGCAGCCAGGTT 179804
Query 225385 TCCGAGGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAAT-TGCCGAGCACACTG 225443
|| || | ||||||||| | |||||| || || || ||| | ||| ||
Sbjct 179803 ACCCTTGTAGCGCTTGAGCTTGAAG---CGCTCGTAGTGGACGATGTGCTG-GCAGACGT 179748
Query 225444 CGTCAAGGAAGCCAGAGTCGTGGGACACAATGATGGACG-ACACGTTCGTCAGGCCCTTG 225502
||| ||||||||||||||||| || || ||||| || | || | | | | ||
Sbjct 179747 TGTCGAGGAAGCCAGAGTCGTGAGAGACGATGATAGAAGTGCAAG---GGGA-GTTGATG 179692
Query 225503 AGGTGCGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGA 225562
|||| | |||||| ||||| | || |||| ||||| ||||| || || |||
Sbjct 179691 AGGTACTCCTCGAGCCACTTAACGTTCTTCACATCCAAATGGTTGGTAGGCTCATCAAGA 179632
Query 225563 AGCAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCC 225622
||||| || || | | | || || ||| || |||| |||||||| ||||| ||
Sbjct 179631 AGCAGAATATCGGGAGCCTCGAAGACGGCACGGCACAGAGCGAGCTTCATCTTCCAACCA 179572
Query 225623 CCGGACAGGGAGCCGAT 225639
|| || |||| || |||
Sbjct 179571 CCAGAAAGGGCGCTGAT 179555
>seq159
Length=1680879
Score = 86.0 bits (94), Expect = 1e-11
Identities = 128/182 (70%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 224978 TACCGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAA 225037
|| |||||||| | ||||||||| |||||| | |||| ||| |||||| || | | |
Sbjct 549113 TAACGCCACTGAAGGTACTGGTTAGGGGTCTTCTCCAAGTGCATCTCAACGTGCTCTAGA 549054
Query 225038 GCATGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGTC 225097
|| ||||| | || | || || | |||||| |||||| || || ||
Sbjct 549053 GCGTGCTGCTTGATATAACCAATACGAAGGTTGGGGTGCTTCTCAACCTTTCCGGTGGTA 548994
Query 225098 GGTTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCA 225157
|| | ||||||||| |||| |||||| || || | |||||| ||||| |||||||||
Sbjct 548993 GGGATAGTCTCGCCGGTAAGGAGCTTGATAAGAGTCGACTTGCCAGCACCGTTGGGGCCA 548934
Query 225158 AT 225159
||
Sbjct 548933 AT 548932
Score = 84.2 bits (92), Expect = 4e-11
Identities = 136/194 (70%), Gaps = 4/194 (2%)
Strand=Plus/Minus
Query 225445 GTCAAGGAAGCCAGAGTCGTGGGACACAATGATGGAC--GACACGTTCGTCAGGCCCTTG 225502
||| ||||| || |||||||| || ||||||| ||| | | || | | ||||
Sbjct 548643 GTCCAGGAATCCGGAGTCGTGAGAAACAATGA--GACTGGTGATGTCGGGATGAGACTTG 548586
Query 225503 AGGTGCGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGA 225562
|||| | |||||| || | |||| || || | ||||| |||||||||||||||
Sbjct 548585 AGGTAGTTCTCGAGCCAAGCGATGTTGGCAACATCAAGATGGTTAGTAGGTTCGTCCAGA 548526
Query 225563 AGCAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCC 225622
|| || | ||||||| ||| || || || | |||| ||||||||| ||||| ||
Sbjct 548525 AGGAGAACGTCAGCACGCTGGAGCATAGCTCGGGCCAGAGCCAGCTTCATCTTCCAACCT 548466
Query 225623 CCGGACAGGGAGCC 225636
|| || ||||| ||
Sbjct 548465 CCAGAAAGGGAACC 548452
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921609347522760
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