Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001703455 .1_202016-08-10] 1,133 sequences; 48,659,641 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq204 390 2e-103 seq284 324 3e-83 >seq204 Length=536571 Score = 390 bits (432), Expect = 2e-103 Identities = 604/849 (71%), Gaps = 24/849 (3%) Strand=Plus/Minus Query 42309 ATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGAC 42368 |||||||||||||| || ||| |||||| || ||||||||||| || ||||||| Sbjct 426054 ATGTACAAGAAGGCTGAGGCTTCCTTCTGGACTGCTGAGGAGATTGATCTTTCCAAGGAT 425995 Query 42369 ACGGCCGGCTGGGAGTCA-----CTGTCTGAGAACGAAAAGTTTTTCCTCAAAAACATAC 42423 || |||| | || ||| ||| | || |||| ||| || |||| | Sbjct 425994 CTCCACGACTGGAA--CAACCGCCTGACTGCCGATGAGCAGTTCTTCGTCTCTCACATCC 425937 Query 42424 TGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGA 42483 | || |||||||| |||||||| || || ||||| |||||||| | | | |||| Sbjct 425936 TTGCTTTCTTCGCTGCCTCTGATGGTATTGTCAACGAGAACCTCGTCGAGCGATTCAGTG 425877 Query 42484 AAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACG 42543 ||||| ||| | ||||| || |||||||||||||||||||| || |||||| Sbjct 425876 GCGAGGTCCAGATCCCCGAGGCTCGTTGCTTCTACGGCTTCCAGATCATGATGGAGAACA 425817 Query 42544 TGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCCCGTCGAGC 42600 | ||||| ||| ||| || ||||||| |||| |||||| ||| |||| | ||| Sbjct 425816 TCCACTCCGAGACCTACTCC---CTGCTCATTGACACCTACATCAAGGAGCCCGCCCAGC 425760 Query 42601 GTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGG 42660 | | | || || || ||||| ||||| || ||||||||| |||||||| ||||||| Sbjct 425759 GAACCTACCTCTTTAACGCCATTGAGACCATTCCCTGCATCCGAAAGAAGGCCGACTGGG 425700 Query 42661 CGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCG 42720 | || |||||| || | ||| | | || | | || | || || ||||| | | Sbjct 425699 CCATCCGATGGATCCAGGATAAGGACTCCTCCTTTGCCCAGCGTCTCGTTGCCTTCGCTG 425640 Query 42721 CCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAA-G 42779 | || ||||| ||||||||| || ||||||||||| ||||||||||||||| || | Sbjct 425639 CTGTTGAGGGTATCTTCTTCAGTGGTGCCTTCGCCTCTATCTTCTGGCTCAAGAAGCGTG 425580 Query 42780 GTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCAT 42839 || || |||||||| || |||||||| ||||| |||||| | || ||||| || || Sbjct 425579 GTCTC-ATGCCCGGTCTGACCTTCTCCAACGAGCTCATCTCTCGTGATGAGGGTCTTCAC 425521 Query 42840 AGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTC-AGGCACAAGCCCTCGAAGGAGCG 42898 | ||||||||||||||||| ||| ||||||| ||| | ||| | ||| || Sbjct 425520 ACTGACTTTGCCTGCCTCCTCCACTC---CCACCTCAAGGGTCGTGCCAGC-AAGCAGAT 425465 Query 42899 GGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCT 42958 | ||| || ||||| || || ||||| || ||| ||||||||||||| || | || Sbjct 425464 GATCCAGGATATCATTACTGACGCCGTCACCATTGAGCAGGAGTTCCTCACTGAGGCTCT 425405 Query 42959 GCCC-GTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCG 43017 ||| ||| |||| ||||||||||| ||||||||| ||||||| ||| ||||| Sbjct 425404 TCCCTGTG-CCCTTCTCGGCATGAACTCTGACCTCATGAAGCAGTACATTGAGTTCGTCG 425346 Query 43018 CCGACCATCTCC-TGTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTC 43076 | || | ||||| ||| | ||| || | | ||||| | | ||||||| Sbjct 425345 CTGATCGTCTCCTTGTCGCGCTTGGCAACGAGAAG-GTTTACAAGGCCACCAACCCCTTC 425287 Query 43077 GACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCC 43136 ||||| |||||||||||||| | | |||||||||||||| ||||||||||| || ||| Sbjct 425286 GACTTCATGGAGAACATCTCCCTTGGTGGCAAGACCAACTTCTTCGAGAAGCGTGTTGCC 425227 Query 43137 GACTACCAG 43145 ||||||||| Sbjct 425226 GACTACCAG 425218 >seq284 Length=101724 Score = 324 bits (358), Expect = 3e-83 Identities = 888/1344 (66%), Gaps = 45/1344 (3%) Strand=Plus/Minus Query 244090 GTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGG 244149 ||| || ||||| ||||| || | || || || || ||||||| |||| | || || Sbjct 52378 GTTGACAACCTGGAACTCACCAGCGAGAACACGTCGTTGGTAGATGTTGGAGGTGTAGGG 52319 Query 244150 CTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACAC 244209 ||||| || ||| |||||||||| ||||| | || || ||||| ||||| || | | Sbjct 52318 CTCGAAGCACTCGTTGTTGCCCAGAATCTGGGAGGTACTGGCAGTAGGCATAGGAGCAAG 52259 Query 244210 CAGCAGACTGTTCCTCACGCCGTGCCTCTGGA-TGCGGAGTCTGAGCTCGTTCCAGTCCC 244268 ||||||||||| | | |||||| ||| || | | || |||| |||| | Sbjct 52258 GAGCAGACTGTTACGGATGCCGTGTGTCTTGACTTC-----CT---CTCGAAG-AGTCTC 52208 Query 244269 ACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGC 244328 || ||| ||||||| | | |||| | ||||||||| ||||| || | |||| Sbjct 52207 CCAGTCCC-AGAGGTCAGAGGGCTTGACGTTCCACATGTCGAACTGGAGGATACCCTCAG 52149 Query 244329 TGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTT-ACAGCTC 244387 | ||||| || | | |||| | ||||||||| || || ||||||| || | Sbjct 52148 AGGCGGGGGAACCTTTGAAGGTAGAGTAGGGACCCTCCTCCTTAGCCAGCTGCACGGAGG 52089 Query 244388 TCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTG 244447 || |||||| |||| ||| ||||||||||||||| |||||| | || || |||| Sbjct 52088 CAGT-GAGGGCAGCGTGGTAAATGGTCTCGAAGATCTGCTTGTTGAGCTCACGAGCCT-- 52032 Query 244448 CCGCAGGT--GAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGA 244505 ||| | |||||| |||| || | ||| | ||||| || ||||| || || | Sbjct 52031 CCGGTGACTCGAAGGGCATGCGCAGAGCAAGGAAAGCATCGGCAAGGCCCTGAACACCAA 51972 Query 244506 TGCCGATGGGTCTGTGTCGCTTGTTGGAGC-GCATGGCTTCGGGCACGGGGTAAAAGTTG 244564 || ||||||| ||| ||| |||| | || | || | || || ||||| ||| Sbjct 51971 GACCAATGGGTCGGTGGCGCATGTTACTGTTGCGAGCCTCCTGG-ACAGGGTAGTGGTTC 51913 Query 244565 CCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGAC-GACGTCGGCCAGCAGCTG 244623 | ||||| | |||||| |||||||| | || | ||| ||| | | || | || Sbjct 51912 ACATCGATGATCTTGTTCAGGTTGCGAACAA-CAACCTGACTGACCTTGTGCAACTTCTT 51854 Query 244624 AAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGAC 244683 |||||||| | | |||| || | |||| || | || || | Sbjct 51853 GAAGTCGTA------GCAAGCCTCATCGTAGTTGATG------AAAGAGGGCAGAGCCAG 51806 Query 244684 GCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCA 244743 ||| ||||||||||| || ||||| || | | ||||| | ||| || ||||| Sbjct 51805 AGAGGCAAGGTTGCAGACAGCGACCTCGTCAGGGGCACAGTACTCAATAATTTCAGTGCA 51746 Query 244744 GAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTC 244803 ||||| || |||||| || |||| || || ||| |||| ||||||||| || Sbjct 51745 CAGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGGCATC 51686 Query 244804 CTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAG 244863 ||||||||||||||| || |||||||| |||||| | || | | || ||| || Sbjct 51685 CTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCCTCAAGAATGGCGTACCAAAG 51626 Query 244864 GTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGC 244923 | | |||||||| ||| ||||| |||||||||| |||||| |||||| || Sbjct 51625 TTTCTGAGCCTTGATAGTCTTGCGACCCTTGCCCTCCTTCTCGTACTTTTCGTACAGAGC 51566 Query 244924 CTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACT 244983 ||||||||| || || ||| | ||||| |||||| |||||||| || | Sbjct 51565 CTCGAACTCCTCTCCGTAGCAGTCGGCGAGGCCAGGGCACTCGTTGGGGCACATCAGCGT 51506 Query 244984 CCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAA 245043 ||| || ||| | | || | || |||||| || || |||||||| ||||| |||| Sbjct 51505 CCAGTCACCGTTCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCAAAGGGCGAGGAA 51446 Query 245044 GAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAA 245103 ||||| | || | ||| || || |||||| | || || | || || || Sbjct 51445 AAGGTCACGGGCACGGACCTCCTCTTTACCGTGGTTCTTACGGAGATCAAGGAACTCGAA 51386 Query 245104 GACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCC 245163 ||| || |||||| ||||| | ||||| || | || ||||| ||||||||||| || Sbjct 51385 GACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCTTGTTGCCACC 51326 Query 245164 CTGGTCCACCATCCTCTCGAGC----GCGTTGAAGATGCGCAGGGTAGGCACTATGCCGT 245219 |||||| | | | ||||| |||||||| || || |||| || | |||| Sbjct 51325 CTGGTCGA----CATAGCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAACACCGT 51270 Query 245220 TAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTG--AGGTTGCTGATGGA 245277 | || |||||||| || |||||||| ||| | | | | | | ||| | | Sbjct 51269 TCGATGTACCGTTGGTACCGGCGATGTAGGAGCCAGTAGCACGGATACGGTGC--ACGTT 51212 Query 245278 CATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTAT 245337 || || | || || || ||||||||| | ||| ||| |||||| || || || Sbjct 51211 CAGACCAATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGTAGAT 51152 Query 245338 GCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGG 245397 ||||| || ||||| |||||| | || || ||||| || |||| ||||||| || Sbjct 51151 TCCCTCAATACTGTCGTCCTTCATATCGACCAAGAAGCAAGATGACAATTGGGGCTGAGG 51092 Query 245398 GCTGCACGAGTTGAACAGAGTGGG 245421 | ||| | |||||| || ||||| Sbjct 51091 GGTGCCGGCGTTGAAGAGCGTGGG 51068 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944325825796080