Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001703455 .1_202016-08-10] 1,133 sequences; 48,659,641 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq284 224 1e-53 >seq284 Length=101724 Score = 224 bits (248), Expect = 1e-53 Identities = 1057/1666 (63%), Gaps = 32/1666 (2%) Strand=Plus/Plus Query 93718 TACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAGG 93777 ||| | ||||||| |||||| ||| ||||| || |||||||||||||| || || | | Sbjct 50888 TACCAATACTTTGGCTTCAAGACTTTGGAGCGATCATACCTCCTCAAGATTGACGGTAAG 50947 Query 93778 GTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGAC 93837 || |||||| || || || || | ||||| || | | || ||| || | || Sbjct 50948 ATTGTCGAGCGCCCTCAGCACATGATCATGCGTGTGTCTGTTGGTATTTGGGGTGATGAT 51007 Query 93838 ATGCCGAATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATAC-CATGGCCAC 93896 || | || ||| | | | || ||| ||| | || |||| | | Sbjct 51008 ATCGAGCGAGTCTTGGAGACATACAACCTGATGTCCAGCAAATTCTTCACACATG-CTTC 51066 Query 93897 CCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGATGAC 93956 || || || |||||||| || ||||| ||| || |||| || || ||| || | Sbjct 51067 TCCCACGCTCTTCAACGCCGGCACCCCTCAGCCCCAATTGTCATCTTGCTTCTTGGTCGA 51126 Query 93957 GAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTC 94016 | |||| |||| || ||||| | ||| | |||||| |||||| | ||||| Sbjct 51127 TATGAAGGACGACAGTATTGAGGGAATCTACGATACTCTCAAGACCTGTGCCATGATCTC 51186 Query 94017 AAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTA--CGTGCCAGGGGTTCCTAC 94074 || || || || || || | | || ||| |||| ||||| | || |||||| Sbjct 51187 CAAGATGGCTGGTGGTATTGGTCTGAACGTGCAC--CGTATCCGTGCTACTGGCTCCTAC 51244 Query 94075 ATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAAC 94134 ||| ||||||||| || || || ||||| | || |||||||| || |||||||||||| Sbjct 51245 ATCGCCGGTACCAACGGTACATCGAACGGTGTTGTTCCTATGCTTCGTGTCTTCAACAAC 51304 Query 94135 GCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTC 94194 | || ||||| || ||||||||||| | | | ||| |||| || |||| ||| Sbjct 51305 ACTGCTCGCTATGTCGACCAGGGTGGCAACAAGCGACCCGGTGCTTTTGCCATCTACCTC 51364 Query 94195 GAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGAT 94254 ||||| |||||| | || || | ||| | || || || ||||||||||| || || Sbjct 51365 GAGCCTTGGCACTCTGATGTCTTCGAGTTCCTTGATCTCCGTAAGAACCACGGTAAAGAG 51424 Query 94255 CTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGC 94314 || | ||| | ||||| ||| ||| || ||| | || || ||||| ||||| || Sbjct 51425 GAGGTCCGTGCCCGTGACCTTTTCCTCGCCCTTTGGATCCCTGATCTTTTCATGAAGCGT 51484 Query 94315 GTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGAC 94374 || || || ||| | ||||| || | || ||||| || || || || || ||||| Sbjct 51485 GTTGAAAAGAACGGTGACTGGACGCTGATGTGCCCCAACGAGTGCCCTGGCCTCGCCGAC 51544 Query 94375 GTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGGCCAGG 94434 | ||| | || || | |||| | ||||| | ||||||||| | Sbjct 51545 TGCTACGGAGAGGAGTTCGAGGCTCTGTACGAAAAGTACGAGAAGGAGGGCAAGGGTCGC 51604 Query 94435 AAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGGGT 94494 ||| ||| | ||| ||| || ||| | || | || | ||| ||||| || Sbjct 51605 AAGACTATCAAGGCTCAGAAACTTTGGTACGCCATTCTTGAGGCCCAGACTGAGACCGGA 51664 Query 94495 ACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTCGGG 94554 | || | ||| | | |||||| | |||| |||| |||||| || ||||||| Sbjct 51665 AACCCATTCATGCTCTACAAGGATGCCTGCAACCGCAAGAGCAACCAAAAGAACCTCGGT 51724 Query 94555 GTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAGATT 94614 ||| ||||| || |||||||| || ||| | ||||| | | || |||||| | Sbjct 51725 ACCATCCGAAGCTCCAACCTGTGCACTGAAATTATTGAGTACTGTGCCCCTGACGAGGTC 51784 Query 94615 GCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCTACACGTCT 94674 ||||| || ||||| | ||| | ||| || ||||| | | | |||| | Sbjct 51785 GCTGTCTGCAACCTTGCCTCTCTGGCTCTGCCCTCTTTCAT-CAA-----CTAC---GAT 51835 Query 94675 ACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAGGATGGTCTT--GAACC 94732 |||| | ||| | || || | || | | | ||| || | || |||| Sbjct 51836 GAGGCTTGCTACGACTTCAAGAAGTTGCACAAGGT--CAGTCAGGTTGTTGTTCGCAACC 51893 Query 94733 TGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCAAACCTGA 94792 |||||| | | ||||| |||| |||||| |||| |||||| ||| ||| || Sbjct 51894 TGAACAAGATCATCGATGTGAACCACTACCCTGTCCAGGAGGCTCGCAACAGTAACATGC 51953 Query 94793 AGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATGATGCGTC 94852 || || ||||| || | || || ||||| | || || || | | |||| Sbjct 51954 GCCACCGACCCATTGGTCTTGGTGTTCAGGGCCTTGCCGATGCTTTCCTTGCTCTGCGCA 52013 Query 94853 TGCCCTACGACTCTGTCGACGCGGCGGGTTTGAATTTGAACATATTCGAAAGCATTTATT 94912 |||||| ||| || || || | | || | | || ||||| | |||||| Sbjct 52014 TGCCCTTCGAGTCACCGGAGGCTCGTGAGCTCAACAAGCAGATCTTCGAGACCATTTACC 52073 Query 94913 ACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATCGGACGGCGGGCCACACGAATCGT 94972 ||| ||| | | ||||| || |||| | ||| | || || || | | Sbjct 52074 ACGCTGCCCTCACTGCCTCCGTGCAGCTGGCTA---AGGAGGAGGGTCCCTACTCTACCT 52130 Query 94973 TCCGCGGATCGCCCTTGGAACAGGGCATTTTTCAGTTCGACCTCTGGGGTGTGAAGCCCT 95032 || || || ||| |||| || | ||||||||| | ||| || ||||||| Sbjct 52131 TCAAAGGTTCCCCCGCCTCTGAGGGTATCCTCCAGTTCGACATGTGGAACGTCAAGCCCT 52190 Query 95033 CGGGTCTGTACGACTGGGAAGCTCTACGCGCTGATGTTATCAAACACGGTGTGAAAAACG 95092 | | || | |||||||| |||| || | || || | | |||||| | ||| Sbjct 52191 CTGACCTCTGGGACTGGGAGACTCTTCGAGAGGAAGTCAAGACACACGGCATCCGTAACA 52250 Query 95093 CGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAACGAGT 95152 ||||| | || || ||||| || ||| || | ||||| || ||||||||||||| Sbjct 52251 GTCTGCTCCTTGCTCCTATGCCTACTGCCAGTACCTCCCAGATTCTGGGCAACAACGAGT 52310 Query 95153 CGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATTCCCCG 95212 ||||| |||| |||||||||| | ||| | | || || ||||| || || |||| | Sbjct 52311 GCTTCGAGCCCTACACCTCCAACATCTACCAACGACGTGTTCTCGCTGGTGAGTTCCAGG 52370 Query 95213 TCATCAACAAGCACCTCCTACGGGACC-TGACGTCTCTGGGTGTGTGGGGTGACAAGGTC 95271 | ||||| || || ||||| || || | ||||| ||||| || | Sbjct 52371 TTGTCAACCCCTGGCTGCTCAAGGACCTTGTCGAC-ATGGGTCTGTGGTCCGATGCTATG 52429 Query 95272 AAGAACC----AACTGCTACGCGCCAACGGCTCCGTCCAGAACATCCCGCAAATACCGGA 95327 ||||||| | |||| | || || ||| | |||||||| || | || || | Sbjct 52430 AAGAACCGCATCATTGCT----GAGAATGGTTCCATTCAGAACATTCCCAACATCCCTGC 52485 Query 95328 GGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCGC 95373 || ||||||| || || |||||||| ||||||||| | |||||| Sbjct 52486 CGATGTCAAGGCTCTGTATAAGACCGTTTGGGAGATCTCTCAGCGC 52531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494716193482680