Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001703455
.1_202016-08-10] 1,133 sequences; 48,659,641 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq168 111 2e-19
seq207 100 3e-16
seq172 86.0 6e-12
>seq168
Length=541571
Score = 111 bits (122), Expect = 2e-19
Identities = 143/195 (73%), Gaps = 2/195 (1%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|||||||| || |||||||||||||||| || || |||||||| || || || | |
Sbjct 348665 GACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGTCCATCCTCGAGCTGCTTGCCAGCA 348724
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539
|||| || ||||| ||||| || || || || || ||||| ||| || || | |
Sbjct 348725 AAGATGAGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACA 348784
Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599
||| || | |||||||| ||||||||||| | || | ||| || || || || || ||
Sbjct 348785 TTG-TCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTT 348843
Query 138600 TACAAAAATCTGCAT 138614
|| |||||||||||
Sbjct 348844 GACGAAAATCTGCAT 348858
>seq207
Length=801058
Score = 100 bits (110), Expect = 3e-16
Identities = 143/198 (72%), Gaps = 4/198 (2%)
Strand=Plus/Plus
Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478
|||||||||| || |||||||||||||||| || || || || | || ||||| |
Sbjct 247798 TTGACTCCTTCTGGATGTTGTAGTCGCTCAAGGTGCGACCATCTTCCAACTGCTTACCAG 247857
Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA 138538
|||| ||||||||||| || || || ||||| || ||||| ||| | || | ||
Sbjct 247858 CGAAGATAAGACGCTGTTGATCAGGGGGAATACCCTCCTTGTC-CTGAATCTTGCTCTTC 247916
Query 138539 A--TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGT 138596
| ||| || | ||||| | ||||| ||||| | || | || || || || |||||
Sbjct 247917 ACGTTG-TCGATAGTGTCACTGGACTCGACCTCAAGGGTGATGGTCTTTCCGGTGAGAGT 247975
Query 138597 TTTTACAAAAATCTGCAT 138614
|| ||||||||||||||
Sbjct 247976 CTTCACAAAAATCTGCAT 247993
Score = 93.3 bits (102), Expect = 4e-14
Identities = 133/184 (72%), Gaps = 4/184 (2%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|| ||||| ||||||||||||||| | || || ||| |||||||| || || | |
Sbjct 248256 GATTCCTTCTGAATGTTGTAGTCGGCAAGGGTTCGGCCGTCTTCGAGTTGCTTTCCAGCA 248315
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-- 138538
|||| || ||||| ||||| ||||| || || || ||||| ||| | |||| |||
Sbjct 248316 AAGATCAGGCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTC-CTGAATCTTTGACTTAAC 248374
Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598
|||| || | ||| |||| |||||| ||||| | || | || || ||||| || || |
Sbjct 248375 ATTG-TCGATGGTATCGGACGACTCGACCTCAAGAGTGATGGTCTTGCCAGTGAGGGTCT 248433
Query 138599 TTAC 138602
| ||
Sbjct 248434 TGAC 248437
>seq172
Length=381824
Score = 86.0 bits (94), Expect = 6e-12
Identities = 137/193 (71%), Gaps = 4/193 (2%)
Strand=Plus/Plus
Query 138425 CCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGA 138484
|||| || |||||||||||| | ||| || |||||||| || ||||| | |||
Sbjct 230230 CCTTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCGAGCTGCTTACCAGCGAAGA 230289
Query 138485 TTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGT 138543
| || |||||||||||||| || || || || ||||| ||| || || | ||||
Sbjct 230290 TCAGTCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTG- 230348
Query 138544 TCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACA 138603
|| | |||||| | ||||| ||||||| || | || || || ||||| || || ||
Sbjct 230349 TCGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACG 230408
Query 138604 AAAATCTGCATGG 138616
||| ||| ||||
Sbjct 230409 AAA--CTGGATGG 230419
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496255371683760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |