Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001703455 .1_202016-08-10] 1,133 sequences; 48,659,641 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq168 111 2e-19 seq207 100 3e-16 seq172 86.0 6e-12 >seq168 Length=541571 Score = 111 bits (122), Expect = 2e-19 Identities = 143/195 (73%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||||||| || || |||||||| || || || | | Sbjct 348665 GACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGTCCATCCTCGAGCTGCTTGCCAGCA 348724 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| || ||||| ||||| || || || || || ||||| ||| || || | | Sbjct 348725 AAGATGAGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACA 348784 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | |||||||| ||||||||||| | || | ||| || || || || || || Sbjct 348785 TTG-TCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTT 348843 Query 138600 TACAAAAATCTGCAT 138614 || ||||||||||| Sbjct 348844 GACGAAAATCTGCAT 348858 >seq207 Length=801058 Score = 100 bits (110), Expect = 3e-16 Identities = 143/198 (72%), Gaps = 4/198 (2%) Strand=Plus/Plus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 |||||||||| || |||||||||||||||| || || || || | || ||||| | Sbjct 247798 TTGACTCCTTCTGGATGTTGTAGTCGCTCAAGGTGCGACCATCTTCCAACTGCTTACCAG 247857 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA 138538 |||| ||||||||||| || || || ||||| || ||||| ||| | || | || Sbjct 247858 CGAAGATAAGACGCTGTTGATCAGGGGGAATACCCTCCTTGTC-CTGAATCTTGCTCTTC 247916 Query 138539 A--TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGT 138596 | ||| || | ||||| | ||||| ||||| | || | || || || || ||||| Sbjct 247917 ACGTTG-TCGATAGTGTCACTGGACTCGACCTCAAGGGTGATGGTCTTTCCGGTGAGAGT 247975 Query 138597 TTTTACAAAAATCTGCAT 138614 || |||||||||||||| Sbjct 247976 CTTCACAAAAATCTGCAT 247993 Score = 93.3 bits (102), Expect = 4e-14 Identities = 133/184 (72%), Gaps = 4/184 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || ||||| ||||||||||||||| | || || ||| |||||||| || || | | Sbjct 248256 GATTCCTTCTGAATGTTGTAGTCGGCAAGGGTTCGGCCGTCTTCGAGTTGCTTTCCAGCA 248315 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-- 138538 |||| || ||||| ||||| ||||| || || || ||||| ||| | |||| ||| Sbjct 248316 AAGATCAGGCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTC-CTGAATCTTTGACTTAAC 248374 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 |||| || | ||| |||| |||||| ||||| | || | || || ||||| || || | Sbjct 248375 ATTG-TCGATGGTATCGGACGACTCGACCTCAAGAGTGATGGTCTTGCCAGTGAGGGTCT 248433 Query 138599 TTAC 138602 | || Sbjct 248434 TGAC 248437 >seq172 Length=381824 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/193 (71%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 138425 CCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGA 138484 |||| || |||||||||||| | ||| || |||||||| || ||||| | ||| Sbjct 230230 CCTTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCGAGCTGCTTACCAGCGAAGA 230289 Query 138485 TTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGT 138543 | || |||||||||||||| || || || || ||||| ||| || || | |||| Sbjct 230290 TCAGTCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTG- 230348 Query 138544 TCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACA 138603 || | |||||| | ||||| ||||||| || | || || || ||||| || || || Sbjct 230349 TCGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACG 230408 Query 138604 AAAATCTGCATGG 138616 ||| ||| |||| Sbjct 230409 AAA--CTGGATGG 230419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496255371683760