Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001703455 .1_202016-08-10] 1,133 sequences; 48,659,641 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq207 116 4e-21 seq168 116 4e-21 seq172 102 8e-17 seq204 95.1 1e-14 >seq207 Length=801058 Score = 116 bits (128), Expect = 4e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | ||| | || | || | || ||||| || || || ||||| |||| | Sbjct 247767 CCACCGCGAAGTCGGAGAACGAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAGTCGCTC 247826 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| ||| || | ||| || |||||| |||| | ||||| ||||| || || Sbjct 247827 AAGGTGCGACCATCTTCCAACTGCTTACCAGCGAAGATAAGACGCTGTTGATCAGGGGGA 247886 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || |||||||||||| || || ||| | |||| |||| ||||| | |||||| Sbjct 247887 ATACCCTCCTTGTCCTGAATCTTGCTCTTCACGTTG-TCGATAGTGTCACTGGACTCGAC 247945 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | || || ||||| ||||| || |||||||||||||| Sbjct 247946 CTCAAGGGTGATGGTCTTTCCGGTGAGAGTCTTCACAAAAATCTGCAT 247993 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || ||||| |||||||| | ||||| || || ||||| || || Sbjct 248535 GTGGACTCCTTCTGAATGTTGTAATCAGAGAGAGTGCGGCCGTCCTCAAGCTGCTTGCCG 248594 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| | ||||| || ||||| ||||| || ||||||||||||||| || || |||| Sbjct 248595 GCGAAAATCAAGCGTTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTTG 248654 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| ||||| | | ||| || |||| ||| | || |||||||||| || Sbjct 248655 ACATTGTCGATAGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCTTGCCGGTCAAGGTC 248714 Query 127097 TTTACAAAAATCTGCATG 127114 || || || ||||||||| Sbjct 248715 TTGACGAAGATCTGCATG 248732 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||||| || | ||||| || || ||||| ||||| ||| Sbjct 247995 CCACCACGAAGACGGAGAACCAAGTGGAGAGTAGATTCCTTCTGAATGTTGTAGTCGGAA 248054 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| || || || || |||||| |||| | |||||| ||||||||||| Sbjct 248055 AGAGTTCGGCCATCTTCAAGTTGCTTGCCAGCGAAGATGAGTCGCTGTTGATCGGGAGGA 248114 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || |||||||||||| ||| || ||| | | || | ||| || | ||||||| Sbjct 248115 ATACCCTCCTTGTCCTGGATCTTGCTCTTCACATTATCAATGGTATCGGATGACTCGACT 248174 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | || || || || || || || || || || ||||| Sbjct 248175 TCCAGAGTAATGGTCTTTCCAGTGAGGGTCTTGACGAAGATTTGCAT 248221 >seq168 Length=541571 Score = 116 bits (128), Expect = 4e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| |||| || ||||| ||| || ||||| || ||| Sbjct 348662 GTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGTCCATCCTCGAGCTGCTTGCCA 348721 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||| | ||||||||| || || || ||||||||||||||| ||| || |||| Sbjct 348722 GCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTG 348781 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| |||||| | | ||| || || | ||| | ||| || || || || || Sbjct 348782 ACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTC 348841 Query 127097 TTTACAAAAATCTGCAT 127113 || || ||||||||||| Sbjct 348842 TTGACGAAAATCTGCAT 348858 >seq172 Length=381824 Score = 102 bits (112), Expect = 8e-17 Identities = 118/158 (75%), Gaps = 2/158 (1%) Strand=Plus/Plus Query 126958 ATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTT 127017 ||| || ||||| || |||||| |||||| |||||| || || || || ||||||||||| Sbjct 230264 ATCCTCGAGCTGCTTACCAGCGAAGATCAGTCGCTGTTGGTCCGGGGGAATGCCCTCCTT 230323 Query 127018 GTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 |||| ||| || ||||| | |||| |||||||| |||||| |||| ||| | Sbjct 230324 GTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCCGAGGACTCGACCTCGAGGGTGAT 230383 Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 127115 || ||||| ||||| || || || ||| ||| |||| Sbjct 230384 GGTCTTGCCCGTCAGGGTCTTCACGAAA--CTGGATGG 230419 >seq204 Length=536571 Score = 95.1 bits (104), Expect = 1e-14 Identities = 240/362 (66%), Gaps = 15/362 (4%) Strand=Plus/Minus Query 47223 ATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAGACGAAGGCCTGCACACCAAC 47282 |||||||| || || || ||||||||| ||||| | || || || || ||||| || Sbjct 425574 ATGCCCGGTCTGACCTTCTCCAACGAGCTCATCTCTCGTGATGAGGGTCTTCACACTGAC 425515 Query 47283 TTTGCCTGTCTCTACTAC----AACACTAGAGTCGATCAA--AAGTTGGACGTGCCCACC 47336 |||||||| ||| | || | | | || |||| | | ||| | || | Sbjct 425514 TTTGCCTGCCTCCTCCACTCCCACCTCAAGGGTCGTGCCAGCAAGCAGA---TGATC--- 425461 Query 47337 GTCAGCGACATGTTTGCCGAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTG 47396 ||| || || || | || |||||| |||||||| |||||| || | |||||||| Sbjct 425460 --CAG-GATATCATTACTGACGCCGTCACCATTGAGCAGGAGTTCCTCACTGAGGCTCTT 425404 Query 47397 CCCGAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCC 47456 ||| | | | || |||||| | || | |||| ||||||| || || ||||| Sbjct 425403 CCCTGTGCCCTTCTCGGCATGAACTCTGACCTCATGAAGCAGTACATTGAGTTCGTCGCT 425344 Query 47457 GACCGCCTGCTCGTTCAGCTAAAGTATCCCAAGATTTACCACACCGAGAATCCATTCGAG 47516 || || || || || ||| | ||| ||||| | || || || ||||| Sbjct 425343 GATCGTCTCCTTGTCGCGCTTGGCAACGAGAAGGTTTACAAGGCCACCAACCCCTTCGAC 425284 Query 47517 TTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAA 47576 || ||| | ||||| || || | |||||||||||||| ||||||||||| || | ||| Sbjct 425283 TTCATGGAGAACATCTCCCTTGGTGGCAAGACCAACTTCTTCGAGAAGCGTGTTGCCGAC 425224 Query 47577 TA 47578 || Sbjct 425223 TA 425222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475494065719920