Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001703455 .1_202016-08-10] 1,133 sequences; 48,659,641 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq613 251 9e-62 seq216 93.3 5e-14 seq551 86.0 8e-12 >seq613 Length=1729140 Score = 251 bits (278), Expect = 9e-62 Identities = 434/629 (69%), Gaps = 6/629 (1%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 |||||||| |||||||||||||| || || || ||||| | ||||| || |||||||| Sbjct 648805 TCGAAATCCTCACCACCCAAGTGAGTGTCACCGGCGGTAGACTTGACCTCGAAGATACCC 648864 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | |||||| | | | |||||||| || ||||||||||| || || || ||||| ||| Sbjct 648865 TCCTCAATGGTAAGGAGAGAAACATCGAAGGTACCACCACCAAGATCGAAGATGAGGACG 648924 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 || ||| | || |||||||| |||||||| || || || || || || || || Sbjct 648925 TTGCGCTCGCCCTCGACCTTCTTATCAAGACCGTAGGCAATGGCGGCAGCAGTAGGCTCG 648984 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 || || || || ||| ||| || || || || | ||||| || || ||||| || Sbjct 648985 TTGATGATTCGGAGAACGTTGAGACCGGCGATGAGACCAGCATCCTTGGTAGCTTGACGC 649044 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756 || |||||||| |||||||| ||||| || || || |||| |||| ||| ||||| Sbjct 649045 TGAGAATCGTTGAAGTAGGCGGGGACAGTAACAACAGCGTTGTTGACAGTCTCGCCGAGG 649104 Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCA 7816 || || || ||| | || ||| ||||| || | ||| | || ||||| || | | Sbjct 649105 TAAGACTCAGCGGTCTCACGCATCTTGGTGAGGATCATGGCGGAGATCTCCTCGGGGGTG 649164 Query 7817 AACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGG 7876 || || || || || || || ||||| || || |||| ||| || | | | Sbjct 649165 AAGGTCTTGGTCTCGCCCTTGAACTCAACCTCGATGTTGGGCTTA---CCACCCTTGTCG 649221 Query 7877 ATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTT 7936 | | ||| | | | | ||||| ||| | ||||||| | || | ||||| | Sbjct 649222 ACGATCTTGAAGGGGAAGTGCTTCATGTCGGCCTGGACCTCAGGATCGGCGAACTTGCGA 649281 Query 7937 CCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTC 7996 ||||| | ||||| || || || || ||||| | |||||||||||| ||||||||| Sbjct 649282 CCGATCAATCGCTTGGCGTCGAAGACAGTGTTCTGGGGGTTCATGGCGACTTGGTTCTTG 649341 Query 7997 GCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTT 8056 || || || || || ||||| || | || || || ||||| | || ||||| ||| Sbjct 649342 GCGGCATCACCAATCAGACGCTC---GGTGTCGGTGAAACCGACGAATGAGGGGGTAGTT 649398 Query 8057 CGATTCCCTTGGTCGTTCGCAATAATTTC 8085 || || || |||||||| || || || || Sbjct 649399 CGGTTACCCTGGTCGTTGGCGATGATATC 649427 Score = 163 bits (180), Expect = 4e-35 Identities = 367/545 (67%), Gaps = 15/545 (3%) Strand=Plus/Minus Query 7244 AGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAA 7303 || ||||| ||||| || ||||| ||||| | ||| || | |||||| | | || Sbjct 956146 AGGTCCTCGAAACGGGCGCGGGTGATGGACATGGTGAAGTCCTCACCGTCGAAGAGAGAG 956087 Query 7304 TCAATTTCAATGGTTGTTTGTGC--CGTCGAAGATAACGTTCGCTTTGCGCGCTCACACG 7361 ||||| |||||||| | || || || | ||| | || ||||| || |||||||| | Sbjct 956086 TCAATCTCAATGGTGGCCTGGGCACCGCTGGAGAGA--GTACGCTTGGCACGCTCACAAG 956029 Query 7362 CCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTT 7421 | ||||| | ||| || |||||||| | | || || | || ||||| || || Sbjct 956028 CAGTTCGGAGACGTCGGAGGGCACGGGCATCGCCAGAGAGGTCCTTCTTCGTCTTTCGGC 955969 Query 7422 TAAACTCTTCAGAGAAGTG-TCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGT 7480 ||||| | | |||| |||| |||| | | |||||||| | ||||||||||| Sbjct 955968 CGAACTCCTTCTTGCAGTGGTCGA-GGAGGTTGGTGTCGAAATCCTGTCCACCCAAGTGG 955910 Query 7481 GTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACA 7540 || || || ||||| || ||||| |||| ||| || | ||||| | | || ||| Sbjct 955909 GTGTCACCAGCGGTAGCCTTGACGGTGAAGACACCACCCTGGATGTTGAGGAGGGAGACA 955850 Query 7541 TCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTA 7600 || || ||||||||||| || || | ||||| ||||| || | ||| | |||| Sbjct 955849 TCGAAAGTACCACCACCGAGATCGTAGATGAGAACGTTGCGCTC--CTTCTCAG-ACTTA 955793 Query 7601 TCG------AGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAG 7654 || |||||||| || || || || || || || || || || ||||| || | Sbjct 955792 CCGGCACCAAGACCGTAGGCAATGGCGGCGGCAGTAGGCTCGTTGATGATACGGAGGACG 955733 Query 7655 TTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAG 7714 || || || ||||| | | || || || || || || || || ||||| |||||| Sbjct 955732 TTGAGACCGGCAATGGAACCGGCGTCCTTGGTGGCCTGACGCTGGTTGTCGTTGAAGTAG 955673 Query 7715 GCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCT 7774 || ||||| || | ||| || | | ||| ||||| ||||| | | || || || || Sbjct 955672 GCAGGGACAGTGATGACGGCCTTCTCGACCTTCTTGCCGAGCTTGGTCTCGGCAATCTCC 955613 Query 7775 TTCAT 7779 ||||| Sbjct 955612 TTCAT 955608 >seq216 Length=1053620 Score = 93.3 bits (102), Expect = 5e-14 Identities = 169/244 (69%), Gaps = 5/244 (2%) Strand=Plus/Plus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 ||||||||| |||||||| | || || || || ||||| || ||| || |||||||| Sbjct 920347 ATCGAAATCCTCACCACCGAGATGGGTGTCACCAGCGGTAGCCAGGACCTCGAAGATACC 920406 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575 | |||||| | | || ||||| || ||||||||||| || || | || | Sbjct 920407 GTCATCAATGGAGAGAAGGGAGACATCGAAGGTACCACCACCGAGATCGTA---GACGAT 920463 Query 7576 GTTCGTATCG-TCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTT 7634 | || | ||| || | | | |||| || |||||||| |||||||| || || || || | Sbjct 920464 GATC-TGTCGCTCACCGTCGGTCTTGTCAAGACCGTAGGCGATAGCGGCGGCGGTGGGCT 920522 Query 7635 CATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTC 7694 | || | || || ||| ||| || || ||||| | | ||||| || || || |||| Sbjct 920523 CGTTGACGATTCGGAGAACGTTGAGACCGGCAATGATACCGGCATCCTTGGTGGCCTGTC 920582 Query 7695 GTTG 7698 | || Sbjct 920583 GCTG 920586 >seq551 Length=8661 Score = 86.0 bits (94), Expect = 8e-12 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 7704 CGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATT 7763 |||||||||| | || || || ||||| ||||| ||||| ||||||||||| || || | Sbjct 4459 CGTTAAAGTATGTGGGAACAGTGACGACGGCGTCTGTGACCTTCTTACCGAGGTAAGACT 4518 Query 7764 CCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTT 7823 | |||| | ||||| ||| |||| ||| | |||| ||| |||| || ||||||| Sbjct 4519 CGGCGACCTGCTTCATCTTGCCTAGAATCATAGCAGAAACCTCCTCAGGTGCTAACTGTT 4578 Query 7824 TCGTTTCACCGT 7835 | | |||||| Sbjct 4579 TGTCTGCACCGT 4590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635123804931720