Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001703455
.1_202016-08-10] 1,133 sequences; 48,659,641 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq284 233 2e-56
seq835 100 3e-16
seq2 86.0 7e-12
>seq284
Length=101724
Score = 233 bits (258), Expect = 2e-56
Identities = 1087/1701 (64%), Gaps = 77/1701 (5%)
Strand=Plus/Minus
Query 109408 CGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATA-TGCATTGAAGA 109466
||||| || ||||| || || ||||| ||| |||||| || | || | ||||| |
Sbjct 52683 CGAAGGTAGTACATGCCAGTCTTGAGGCCAAGCTTCCA-GCCTGCAAAGTGCATACTGGT 52625
Query 109467 GAGTTTGGAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGATCGATGAA 109526
|| ||| | || || || ||| | ||||| ||||| |||||||| |||||
Sbjct 52624 GATCTTGCCCATCGTGGGGTCCTTCATGTGGATGTTCAGTGACTGGGACTGATCAATGAA 52565
Query 109527 TCGACCACGATCAGCCGCCATGTCGATGATACACTTTTGGCTAA----TTTCCCAGACAG 109582
||| |||||||| ||||| | | || | | ||| | | ||||| || |
Sbjct 52564 GGCACCTCGATCAGCAGCCATCTGAACGA----CCTGGCGCTGAGAGATCTCCCAAACGG 52509
Query 109583 TCTTGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCCAC--- 109639
|||| |||| | ||||| ||| | || |||| ||||| ||||| || |||
Sbjct 52508 TCTTATACAGAGCCTTGACATCGGCAGGGATGTTGGGAATGTTCTGAATGGAACCATTCT 52449
Query 109640 CAGCCTTCACCATGAGATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGATCGT 109699
|||| | | || | | |||||| | | ||||| ||||| | | | || | ||
Sbjct 52448 CAGCAATGA---TGCGGTTCTTCATAGCATCGGACCACAGACCCA---TGTCGACAAGGT 52395
Query 109700 CAACAAGATGCTTG---TTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGA 109756
| || || | ||||| || || |||||||| || ||||| ||||||
Sbjct 52394 CCTTGAGCAGCCAGGGGTTGACAACCTGGAACTCACCAGCGAGAACACGTCGTTGGTAGA 52335
Query 109757 TGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTG 109816
|||| | |||||||| ||||| ||||| |||||||| || || || | || || |
Sbjct 52334 TGTTGGAGGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGGGAGGTACTGGCAG 52275
Query 109817 TGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACCCTTCGTCTTTACCCGCTCACGCA 109876
| ||||| ||||| | ||| |||||||| |||| || | ||||| || ||| || |
Sbjct 52274 TAGGCATAGGAGCAAGGAGCAGACTGTTACGGATGCCGTGTGTCTTGACTTCCTCTCGAA 52215
Query 109877 TTGCGTCCCAATCATAACGACCACTAAATTTAGTCTCACCATCCCACATATCTGGTTGAA 109936
| ||||| || | | || | || | | |||||| || || |
Sbjct 52214 GAGTCTCCCAGTCCCAGAGGTCAGAG------GGCTTGACGTTCCACATGTCGAACTGGA 52161
Query 109937 GTACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACGACCCCTCAACCTCGGCCA 109996
| | |||||||| || || ||||| ||||| | ||| | ||||| ||| ||||
Sbjct 52160 GGATACCCTCAGAGGCGGGGGAACCTTTGAAGGTAGAGTAGGGACCCTCCTCCTTAGCCA 52101
Query 109997 ACTCGGATGAAGCCTCT-AGTGCCGCATGATACATAGTCTCAAAAATATGAGCATTCATG 110055
|| | | | || | | || || || || || || ||||| || || || || ||
Sbjct 52100 GCT-GCACGGAGGCAGTGAGGGCAGCGTGGTAAATGGTCTCGAAGATCTGC---TTGTTG 52045
Query 110056 AGG---CGAGACTCTTCACAGTCGAAGGGAAGACCACAAAG-AATAAACACATCCGCTAG 110111
|| |||| ||| | |||||||| | | || || || || |||| || ||
Sbjct 52044 AGCTCACGAGCCTCCGGTGACTCGAAGGGCATGCG-CAGAGCAAGGAAAGCATCGGCAAG 51986
Query 110112 ACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTCTAC 110171
||||||||||| ||||||||||| || || ||||||| | ||||| | ||
Sbjct 51985 GCCCTGAACACCAAGACCAATGGGTCGGTGGCGCATGTTACTGTTGCGAGCCTCCTGGAC 51926
Query 110172 GGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATT--------CTTCGTCACAGTCTTC 110223
||||| ||| ||||||| | || || || | | | || | | |
Sbjct 51925 AGGGTAGTGGTTCACATCGATGATCTTGTTCAGGTTGCGAACAACAACCTGACTGACCTT 51866
Query 110224 GTG--ATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTATTGACATATTTGG 110281
||| | ||| || ||| |||| | | | | |||| || ||| | | ||
Sbjct 51865 GTGCAACTTCTTGAAGT----CGTAG-CAAGCCTCATCGTAG--TTGATGAAAGA---GG 51816
Query 110282 GGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAA 110341
| ||||| | ||| ||||| ||||| |||| |||||| | | ||| || | ||
Sbjct 51815 GCAGAGCCAGAGAGGCAAGGTTGCAGACAGCGACCTCGTCAGGGGCACAGTACTCAATAA 51756
Query 110342 TTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGT 110401
|||| || |||| |||||| || ||| ||| | |||||| || || ||| ||
Sbjct 51755 TTTCAGTGCACAGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTTGCTCTTGCGGT 51696
Query 110402 TGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGG 110461
|||| |||||||| ||||||||| ||||| | || || || ||||| | || |||||||
Sbjct 51695 TGCAGGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCCTCAAGAATGG 51636
Query 110462 CCTTCCATACATCGGCGGCGGGGACAGT--TGCGTTAGCGAGACCTTCCTCCTCGTACTT 110519
| | ||| | | || || ||| |||| | | || |||| |||||||||
Sbjct 51635 CGTACCAAAGTTTCTGAGCCTTGATAGTCTTGCG--ACCCTTGCCCTCCTTCTCGTACTT 51578
Query 110520 GGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTGTCGGG 110579
||||| |||| || |||| |||||| || | || || || || |||
Sbjct 51577 TTCGTACAGAGCCTCGAACTCCTCTCCGTAGCAGTCGGCGAGGCCAGGGCACTCGTTGGG 51518
Query 110580 ACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCA 110639
|| | || | ||| | || || ||||| | ||||||||| || ||||| |||||
Sbjct 51517 GCACATCAGCGTCCAGTCACCGTTCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCA 51458
Query 110640 CATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTC 110699
| || ||||||||||||| ||| |||| || | ||| ||||| || || ||
Sbjct 51457 AAGGGCGAGGAAAAGGTCACGGGCACGGACCTCCTCTTTACCGTGGTTCTTACGGAGATC 51398
Query 110700 CAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAG------ACAGCGATGGATCC 110753
| || || | || ||| |||||||| || ||||| ||| | ||| || ||
Sbjct 51397 AAGGAACTCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCG 51338
Query 110754 CTTACGACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGG 110813
||| | | || |||||| |||||||| || ||| |||||||| | ||||||||
Sbjct 51337 CTT--GTTG-CCACCCTGGTCGACATAGCGAGCAGTGTTGTTGAAGACACGAAGCATAGG 51281
Query 110814 AATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTC 110873
|| || || | ||| ||| || ||||| || ||| | | ||||| ||
Sbjct 51280 AACAACACCGTTCGATGTACCGTTGGTACCGGCGATGTAGGAGCCAGTAGCACGGATACG 51221
Query 110874 GTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACA-CTCTGTGAGTG 110932
||| | | || |||||||||||| ||| ||| || ||||| ||| |||| |
Sbjct 51220 GTGCACGTTCAGACCAATACCACCAGCCATCTTGGAGATCATGGCACAGGTCT-TGAGAG 51162
Query 110933 TACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCT 110992
|| | || || || ||||| || |||| | | | | |||||||| |||| |
Sbjct 51161 TATCGTAGATTCCCTCAATACTGTCGTCCTTCATATCGACCAAGAAGCAAGATGACAATT 51102
Query 110993 GAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCTTG-- 111050
| || |||| || || || |||||||| || || | ||||| ||| ||| |||
Sbjct 51101 GGGGCTGAGGGGTGCCGGCGTTGAAGAGCGTGGGAGAAGCATGTGTGA--AGAATTTGCT 51044
Query 111051 GGACATCTTGTTGTATGTGTC 111071
||||||| ||||||||| ||
Sbjct 51043 GGACATCAGGTTGTATGTCTC 51023
>seq835
Length=398155
Score = 100 bits (110), Expect = 3e-16
Identities = 219/324 (68%), Gaps = 12/324 (4%)
Strand=Plus/Plus
Query 11592 GAAACCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGG 11651
||||||||||||||| ||||||| |||||| | || ||| ||||||||||||
Sbjct 87342 GAAACCGTCCATTTCAGTGAGAATCTGGTTCAGAGTTGCTTCCCGCTCATCGTTGCCAC- 87400
Query 11652 CATACCACCTGCCGAACGCTTCTTACCGACA-------GCGTCAATCTCATCGATGAATA 11704
|| | | || |||| | | | | | || |||||||||||||| ||||| |
Sbjct 87401 CAAATCCCCGGCCGCTCTCCTGTCGCGCACGTCCAATTGCGTCAATCTCATCAATGAAGA 87460
Query 11705 CGATACACGGTTGGTTGGCACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAA 11764
||| || || ||| |||| | | |||| | || | ||||| | || |
Sbjct 87461 TGATGCAAGGGGCGTTCTTACGTCCTTCGGCGAACAAATCTCTCACACGTGAAGGACCGA 87520
Query 11765 CACCTACGAACATCTCAACGAAGTTTG--CGGCAGAACACTGAATGAAGGGAACATTAGA 11822
|||| || ||||| |||||||| | | | || | ||||||| ||| || || |||
Sbjct 87521 CACCGACAAACATTTCAACGAACTCAGAACCGCTCA-CACTGAA-GAATGGTACTCCAGA 87578
Query 11823 CTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAG 11882
||| || || |||| || || | |||||||| |||||||| | |||||| | |
Sbjct 87579 CTCGCCGGCCGTGGCCTTGGCAAGCAATGTCTTACCGGTACCAGGAGGACCAGCTAAGAT 87638
Query 11883 GGCGCCACGGGGGATCTTGGCACC 11906
|| || || ||||||||||||||
Sbjct 87639 AGCACCTCGAGGGATCTTGGCACC 87662
>seq2
Length=1384398
Score = 86.0 bits (94), Expect = 7e-12
Identities = 122/172 (71%), Gaps = 0/172 (0%)
Strand=Plus/Plus
Query 158480 ATGGGCGTGTGGCACCTCGTTCGGGTTTGGCTGTGAAGCACTGTATCAACGTTGGTGCGG 158539
|||| || | || ||||| |||||| | ||| ||||| | || || || || |
Sbjct 591826 ATGGACGCATTGCTCCTCGATCGGGTCTCGCTTCCAAGCATTTCATTGACACAGGCGCTG 591885
Query 158540 GGGTCATCGATCCTGATTATACTGGAGAAGTCAAAGTCGTTCTCTTCAATCATGGAGACA 158599
| ||||||||| | ||||| || | ||||| ||| | |||||||| ||| ||
Sbjct 591886 GTGTCATCGATGCCGATTACCGCGGCCAGGTCAAGGTCCTGCTCTTCAACCATAACGAAT 591945
Query 158600 AGGACTTTGAGGTTAAGAAGGGTGATCGCATCGCACAGCTTGTTCTAGAACG 158651
||||||||||| ||| |||| || ||||| || ||||||||||| || ||
Sbjct 591946 CCGACTTTGAGGTGAAGGAGGGCGACCGCATTGCTCAGCTTGTTCTGGAGCG 591997
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588967658627400
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