Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001703455 .1_202016-08-10] 1,133 sequences; 48,659,641 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq284 203 4e-47 seq204 129 7e-25 >seq284 Length=101724 Score = 203 bits (224), Expect = 4e-47 Identities = 1113/1744 (64%), Gaps = 57/1744 (3%) Strand=Plus/Minus Query 105590 CGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCACGCGTACATA-TGCATAGAAGA 105648 || || |||||||| || |||||||| || | ||||| || | || | |||||| | Sbjct 52683 CGAAGGTAGTACATGCCAGTCTTGAGGCCAAGCTTCCA-GCCTGCAAAGTGCATACTGGT 52625 Query 105649 GAGCTTGGACATCGTTGGACTTTCCATGAAAAGATTCAT--ACTTTGACTCTGGTCAATG 105706 || |||| |||||| || | |||| | |||| ||| |||| | |||||| Sbjct 52624 GATCTTGCCCATCGTGGGGTCCTTCATGTGGATGTTCAGTGACTGGGACT--GATCAATG 52567 Query 105707 AAGCGACCACGTTGTGCCGCCATATCAATGACATCCTTCATCTTGATTTCCCACACTGTG 105766 ||| ||| || | || ||||| | || ||| | | ||| ||||| || || Sbjct 52566 AAGGCACCTCGATCAGCAGCCATCTGAACGACCTGGCGCTGAGAGATCTCCCAAACGGTC 52507 Query 105767 CGGTAGAGATTCTTGATATCATCTGGGATATCTGAGATATTTTGAATTGAACC---CCCC 105823 || ||| ||||| ||| | ||||| | | || || ||||| ||||| | | Sbjct 52506 TTATACAGAGCCTTGACATCGGCAGGGATGTTGGGAATGTTCTGAATGGAACCATTCTCA 52447 Query 105824 GCCTTGACCATGAGATCCTTCATATCCTTGGACCAAAGACCAATCTTCTTGAGATCATTG 105883 || ||| || | | ||||||| | | |||||| ||||| || | || || ||| Sbjct 52446 GCAATGA---TGCGGTTCTTCATAGCATCGGACCACAGACCCATGTCGACAAGGTCCTTG 52390 Query 105884 ACGAGATGCTTGTTGACAATCACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTC 105943 | || |||||||| | ||||| || ||||| | || | |||||||| Sbjct 52389 AGCAGCCAGGGGTTGACAACCTGGAACTCACCAGCGAGAACACGTCGTTGGTAGATGTTG 52330 Query 105944 GTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGC 106003 | |||||||| || ||||| || || || |||| || || | ||| ||| || ||| Sbjct 52329 GAGGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGGGAGGTACTGGCAGTAGGC 52270 Query 106004 ATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAACA 106063 || || || | | ||||||||||| | || | | ||||| ||||| ||| | Sbjct 52269 ATAGGAGCAAGGAGCAGACTGTTACGGATGCCGTGTGTCTTGAC---TTCCTCTCGAAGA 52213 Query 106064 ---TCCCAGTCGTAGTTG--AGCTTGGTTTCACCTTCCCACATATCAAATTGAAGCACCC 106118 |||||||| || | || || || || |||| |||| || || || || | | Sbjct 52212 GTCTCCCAGTCCCAGAGGTCAGAG-GGCTTGACGTTCC-ACATGTCGAACTGGAGGATAC 52155 Query 106119 CTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATT-CA 106177 | | || | ||| ||||| | || || |||| ||| | | | ||||| | || Sbjct 52154 CCTCAGAGGCGGGGGAACCTTTGAAGGTAGAGTAGGGACCCTCCTCCTTAGCCAGCTGCA 52095 Query 106178 CAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTG 106237 | | || |||| ||||| || ||||| || ||||| | || | ||| Sbjct 52094 CGGAG-GCAGTGAGGGCAGCGTGGTAAATGGTCTCGAAGATCTGCTTGTTGAGCTCACGA 52036 Query 106238 GCTTCATCTGAATCAAATGCGTAGCGGCACAA-AATAAATACATCCGCGAGACCTTGAAC 106296 || || ||| || || | ||| || | || || |||| || || || ||||| Sbjct 52035 GCCTCCGGTGACTCGAAGGGCATGCG-CAGAGCAAGGAAAGCATCGGCAAGGCCCTGAAC 51977 Query 106297 ACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAA 106356 ||| | |||||| |||| ||| ||||| ||| || || || || || || || Sbjct 51976 ACCAAGACCAATGGGTCGGTGGCGCATGTTACTGTTGCGAGCCTCCTGGACAGGGTAGTG 51917 Query 106357 ATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATG-AAGTT 106415 || || |||| ||| || || ||||| || ||| | || || || Sbjct 51916 GTTCACATCGATGATCTTGTTCAGGTTGCGAACAACAACCTGACTGACCTTGTGCAACTT 51857 Query 106416 TTTCATAATCAAAAGTGCGAGTCTCTTCAT---TGACATACTTTGGAAGGGCGATTGATG 106472 || | | || | || || ||| || | ||| | || || || | || | Sbjct 51856 CTTGA-AGTCGTA---GCAAGCCTCATCGTAGTTGATGAAAGAGGGCAGAGCCAGAGAGG 51801 Query 106473 CCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGT 106532 | | ||||| ||||| ||| || | |||||| | |||||| || |||| || Sbjct 51800 CAAGGTTGCAGACAGCGACCTCGTCAGGGGCACAGTACTCAATAATTTCAGTGCACAGGT 51741 Query 106533 TGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGT 106592 |||| || || || || | ||||||||||| ||||| |||||| |||||||||| Sbjct 51740 TGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGGCATCCTTGT 51681 Query 106593 AGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACACAT-CG 106651 |||||||| | || | || ||||| ||||| | || ||||| || | ||| | | | Sbjct 51680 AGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCCTCAAGAATGGCGTACCAAAGTTTCT 51621 Query 106652 GCGGCTGG-TACAATGGCGTTGGCCCGT-CCCTCCGCCTCGTACTTTGTGTAGAGGGCTT 106709 | | || | || | ||| ||| | |||||| |||||||||| ||| || || | Sbjct 51620 GAGCCTTGATAGTCTTGCGA---CCCTTGCCCTCCTTCTCGTACTTTTCGTACAGAGCCT 51564 Query 106710 CAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACC 106769 | |||||||| || ||||| ||| || || || || || || | || | || Sbjct 51563 CGAACTCCTCTCCGTAGCAGTCGGCGAGGCCAGGGCACTCGTTGGGGCACATCAGCGTCC 51504 Query 106770 ATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGG--GATGAAAA 106827 | | ||| || ||||| |||||||||||||| || || ||||| ||| || |||| Sbjct 51503 AGTCACCGTTCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCAAAGGGCGAGGAAA- 51445 Query 106828 GAGATCTC-TACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCA 106886 || || | ||| || |||| || | ||| ||||| || | ||||||||||| | Sbjct 51444 -AGGTCACGGGCACGGA-CCTCCTCTTTACCGTGGTTCTTACGGAGATCAAGGAACTCGA 51387 Query 106887 TGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCG---ACGCCCAG 106943 || ||| | |||||| ||||| || |||| || | || || ||| ||| Sbjct 51386 AGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCTTGTTGCCAC 51327 Query 106944 CTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTG 107003 | || | |||||||| || ||| ||| || || |||||||| |||| || ||| | | Sbjct 51326 CCTGGTCGACATAGCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAACACCGTTCG 51267 Query 107004 ATTGACCATTTGT-CCCCCGA-ATACGAGATTTATTGGCTCTCACATCATGGATGTGCAT 107061 || ||| || || || ||| || ||| | | || | | | || | || || Sbjct 51266 ATGTACCGTTGGTACCGGCGATGTAGGAG--CCAGTAGCACGGATACGGTGCACGTTCAG 51209 Query 107062 CCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACC 107121 |||||||| |||||| ||| ||||| ||||| | | ||||| | ||||| || Sbjct 51208 ACCAATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGTAGATTCC 51149 Query 107122 GTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGT 107181 | || ||| ||||| | ||| | ||||||| |||| || || || || Sbjct 51148 CTCAATACTGTCGTCCTTCATATCGACCAAGAAGCAAGATGACAATTGGGGCTGAGGGGT 51089 Query 107182 ACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACA--TACCTTGGGACATCTTGTCG 107239 || || |||||||| || || | || || |||| | | || ||||||| || | Sbjct 51088 GCCGGCGTTGAAGAGCGTGGGAGAAGCATGTGTGAAGAATTTGCT--GGACATCAGGTTG 51031 Query 107240 TATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAAC 107299 |||||||||||||| || || || || || || || | | ||||||||| | | Sbjct 51030 TATGTCTCCAAGACTCGCTCGATATCATCACCCCAAATACCAACAGACACACGCATGATC 50971 Query 107300 ATGT 107303 |||| Sbjct 50970 ATGT 50967 >seq204 Length=536571 Score = 129 bits (142), Expect = 7e-25 Identities = 335/504 (66%), Gaps = 20/504 (4%) Strand=Plus/Plus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 ||||| |||| |||||||| |||||||||||||| ||| ||||| ||||| ||||| Sbjct 425222 TAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTCTCCATG 425281 Query 117046 AAGTCAAATGGATTCTTCGCGTTCCAAA-----TGGGTGGCACCC-CAACTTGTTTGAGG 117099 ||||| || || || | || || ||| | | || || | | || ||| Sbjct 425282 AAGTCGAAGGGGTTGGTGGCCTTGTAAACCTTCTCGTTGCCAAGCGCGACA------AGG 425335 Query 117100 AGACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGA 117159 |||||||| | || |||||||||||| ||| ||||||||||| |||| || Sbjct 425336 AGACGATCAGCGACGAACTCAATGTACTGCTTCATGAGGTCAGAGTTCATGCCGAGAAGG 425395 Query 117160 TTACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATG 117219 ||| || || || || || |||| | | |||||| || || || | | ||| Sbjct 425396 GCACAGGGAAGAGCCTCAGTGAGGAACTCCTGCTCAATGGTGACGGCGTCAGTAATGATA 425455 Query 117220 GCGTGGATAGTTTCGGTAGTGGGTCTA---TTACGCAAAGTCTTGAAGAGCTCCACGGCA 117276 | ||||| | | | ||| | | || | | | || ||| || |||| Sbjct 425456 TCCTGGATCATCTGCTTGCTGGCACGACCCTTGAGGTGGGAGTGGAGGAGG--CA-GGCA 425512 Query 117277 AACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGC 117336 || || ||| ||||||||||| || || || || || || |||||| || || ||| Sbjct 425513 AAGTCAGTGTGAAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCGGGC 425572 Query 117337 ATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCC 117396 |||||||| |||||||| | ||| | |||| | ||| | || ||||||||||||| Sbjct 425573 ATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGCACCACTGAAGAAGATACCC 425632 Query 117397 TCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGT-GTCAAACCA 117455 || ||| || || |||| || |||| ||| |||||| ||| | || | | | ||| Sbjct 425633 TCAACAGCAGCGAAGGCAACGAGACGCTGGGCAAAGGAG-GAGTCCTTATCCTGGATCCA 425691 Query 117456 TTTCATTGCCCATTTCGCCTTCTT 117479 | || ||||| | |||||||| Sbjct 425692 TCGGATGGCCCAGTCGGCCTTCTT 425715 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589972444396920