Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001703455
.1_202016-08-10] 1,133 sequences; 48,659,641 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq613 96.9 3e-14
seq207 96.9 3e-14
seq216 91.5 1e-12
seq551 86.0 5e-11
>seq613
Length=1729140
Score = 96.9 bits (106), Expect = 3e-14
Identities = 98/128 (77%), Gaps = 0/128 (0%)
Strand=Plus/Minus
Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468
||||| || || || || || || || || ||||||||||| || |||||||| | ||
Sbjct 649073 ACTGTCCCCGCCTACTTCAACGATTCTCAGCGTCAAGCTACCAAGGATGCTGGTCTCATC 649014
Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGA 550528
|| || || || ||||| || || ||||| || ||||||||||| || |||| || ||
Sbjct 649013 GCCGGTCTCAACGTTCTCCGAATCATCAACGAGCCTACTGCTGCCGCCATTGCCTACGGT 648954
Query 550529 CTTGATAA 550536
||||||||
Sbjct 648953 CTTGATAA 648946
Score = 87.8 bits (96), Expect = 1e-11
Identities = 86/111 (77%), Gaps = 0/111 (0%)
Strand=Plus/Minus
Query 390901 TTAACTAATTTTCTTTGGATATAACCAGTGTCTGCAGTTTTAATTGCAGTATTAATAATA 390960
||||| ||| || ||||||||||| || || ||||| || | |||||||| ||| | |
Sbjct 928314 TTAACCAATCGTCGCTGGATATAACCTGTTTCGGCAGTCTTGACTGCAGTATCAATGAGA 928255
Query 390961 CCTTCTCTTCCTGCCATAACTTGGAAGAAAAATTCCATAGGATTGAGTCCA 391011
||||||| || ||||| | |||||||||||||| | ||| |||| |||
Sbjct 928254 CCTTCTCGACCAGCCATGGCGTGGAAGAAAAATTCGCTGGGAGTGAGACCA 928204
>seq207
Length=801058
Score = 96.9 bits (106), Expect = 3e-14
Identities = 155/220 (70%), Gaps = 2/220 (1%)
Strand=Plus/Plus
Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316
|||||||| || | || || ||| ||| || ||| ||||| || | |||||||
Sbjct 248004 AGACGGAGAACCAAGTGGAGAGTAGATTCCTTCTGAATGTTGTAGTCGGAAAGAGTTCGG 248063
Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376
|||||||||||| || || || || || |||| || ||||| |||||||| || ||
Sbjct 248064 CCATCTTCAAGTTGCTTGCCAGCGAAGATGAGTCGCTGTTGATCGGGAGGAATACCCTCC 248123
Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGT 563435
|| || || || || || || ||||| ||||| | ||| | | ||| |||||
Sbjct 248124 TTGTCCTGGATCTTGCTCTTCACATTATCAATGGTATC-GGATGACTCGACTTCCAGAGT 248182
Query 563436 AACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475
|| || || ||||| || || || ||||| |||||||||
Sbjct 248183 AATGGTCTTTCCAGTGAGGGTCTTGACGAAGATTTGCATA 248222
Score = 87.8 bits (96), Expect = 1e-11
Identities = 101/136 (74%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 563256 GAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCT 563315
||| ||||| || |||||||||||| ||| || ||| ||||| || || || ||||
Sbjct 248231 GAGGCGGAGGACGAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCGGCAAGGGTTCG 248290
Query 563316 TGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTC 563375
||||| ||||| ||||| ||||| || || | ||||| |||||||| || || ||
Sbjct 248291 GCCGTCTTCGAGTTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGAGGGATGCCCTC 248350
Query 563376 TTTATCTTGAATTTTT 563391
|| || ||||| |||
Sbjct 248351 CTTGTCCTGAATCTTT 248366
>seq216
Length=1053620
Score = 91.5 bits (100), Expect = 1e-12
Identities = 124/173 (72%), Gaps = 0/173 (0%)
Strand=Plus/Minus
Query 550004 GATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAAATTATT 550063
||| | ||||||||||| || ||||| ||||| ||| || || || ||||| ||| |
Sbjct 921124 GATCTTGGAACCACATACAGCTGTGTCGGTGTGATGCAGAAGGGCAAGGTTGAGATTCTC 921065
Query 550064 GCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACTGAACAT 550123
| ||| ||||| |||||| ||| ||||| ||||| || | ||||| || ||| | |
Sbjct 921064 GTCAACGATCAGGGTAACCGAATCACTCCCTCTTACGTCGCCTTCACCGAGGATGAGCGT 921005
Query 550124 TTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACTAT 550176
|| ||||| || || || || | || ||| | | ||| || || || || ||
Sbjct 921004 TTGGTTGGAGACGCCGCCAAGAACCAGGCCGCCGCTAACCCCACGAACACCAT 920952
>seq551
Length=8661
Score = 86.0 bits (94), Expect = 5e-11
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 550004 GATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAAATTATT 550063
||| |||| || |||||||| || || ||||| |||||| | || || | ||| ||
Sbjct 4947 GATCTAGGTACGACATATAGCTGCGTCGGTGTGATGCAAAAGCGCAAGGTCAAGATTCTT 4888
Query 550064 GCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACTGAACAT 550123
| ||| ||||| |||||| ||| |||||||||||||||| | ||||| | | || |
Sbjct 4887 GTCAACGATCAGGGTAACCGAATTACTCCATCTTATGTTGCCTTCACTAAGGAGGGACGT 4828
Query 550124 TTAGTTGGTGATGCAGCAAA 550143
| ||||||||| | || ||
Sbjct 4827 CTGGTTGGTGATTCCGCCAA 4808
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4029236081850170
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |