Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001703455 .1_202016-08-10] 1,133 sequences; 48,659,641 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq284 242 7e-59 seq204 194 3e-44 >seq284 Length=101724 Score = 242 bits (268), Expect = 7e-59 Identities = 807/1230 (66%), Gaps = 59/1230 (5%) Strand=Plus/Minus Query 221417 GTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG-GCCTCGGG 221475 || |||||||||||||| |||||||| |||||| ||||||||| ||| | ||||| || Sbjct 52086 GTGAGGGCAGCGTGGTAAATGGTCTCGAAGATCTGCTTGTTGAG-CTCACGAGCCTCCGG 52028 Query 221476 AGAAGTGAAGGGCATACGCAGCATCT--GAAAGACGTCGGCCAGTCCCTGTACTCCGATA 221533 || ||||||||| ||||| | | ||||| | ||||| || ||||| || || | | Sbjct 52027 TGACTCGAAGGGCATGCGCAG-AGCAAGGAAAG-CATCGGCAAGGCCCTGAACACCAAGA 51970 Query 221534 CCGATGGGCCTGTGTCTCCTGTTG--GAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGA 221591 || ||||| | ||| | | |||| | ||| | || |||| || || || ||| | Sbjct 51969 CCAATGGGTCGGTGGCGCATGTTACTGTTGCGAGC-CTCCTGG-ACAGGGTAGTGGTTCA 51912 Query 221592 CGTCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGT 221651 | ||||| | ||||| ||||| || | || | | |||| | || ||||| | Sbjct 51911 CATCGATGATCTTGTTCAGGTTGCGAACAACAACCTGACTGACCTTGTGCAACTTCTTGA 51852 Query 221652 GATTGAACACCAACTCGCCGC--CGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAAC 221709 | | | ||| ||| | ||| || || | |||| | || || | Sbjct 51851 AGTCGTAG--CAA---GCCTCATCGTAGTTGATG---------AAAGAGGGCAGAGCCAG 51806 Query 221710 GCTGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACA 221769 ||| ||||| || || || |||||||| | |||| || || || || || Sbjct 51805 AGAGGCAAGGTTGCAGACAGCGACCTCGTCAGGGGCACAGTACTCAATAATTTCAGTGCA 51746 Query 221770 GAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTC 221829 |||||| || |||||| || |||| || || || |||||| ||| || || Sbjct 51745 CAGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGGCATC 51686 Query 221830 CTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAG 221889 |||||||||||| || || || ||||| ||| ||| | ||||| || ||| || Sbjct 51685 CTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCCTCAAGAATGGCGTACCAAAG 51626 Query 221890 TTCTCTG-GCGCTCACCGTCCT------CTTGACTGCACCCTCGGTCTTTTCATACCCGG 221942 || |||| || | | ||| | |||| | | |||| |||||| ||| Sbjct 51625 TT-TCTGAGCCTTGATAGTCTTGCGACCCTTGCCCTCCTTCTCGTACTTTTCGTAC---- 51571 Query 221943 TATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGAC 222002 ||||| | | |||| || ||||| ||| | ||||| || ||| | ||| | Sbjct 51570 ---AGAGCCT--CGAACTCCTCTCCGTAGCAGTCGGCGAGGCCAGGGCACTCGTTGGGGC 51516 Query 222003 ACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACA 222062 ||||||| |||||| ||| | || || | || |||||| || || |||||||| | Sbjct 51515 ACATCAGCGTCCAGTCACCGTTCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCAAA 51456 Query 222063 GCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCA 222122 | || | || || || | || || |||||| |||| ||| || | ||||| | Sbjct 51455 GGGCGAGGAAAAGGTCACGGGCACGGACCTCCTCTTTACCGTGGTTCTTACGGAGATCAA 51396 Query 222123 AAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCT 222182 ||||| || | |||| |||||| ||||| || |||| ||| | ||| |||||||||| Sbjct 51395 GGAACTCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCT 51336 Query 222183 TGTTGCCACCCTGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACC 222241 ||||||||||||| || | ||| ||| | |||||||| ||||| | || || Sbjct 51335 TGTTGCCACCCTGGTCGA-CATAGCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACA 51277 Query 222242 AGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTG 222301 | ||||| ||| ||||||||| || ||||| | || || | || ||| | Sbjct 51276 ACACCGTTCGATGTACCGTTGGTACCGGCGATGTAGGAGCCAGTAGCAC---GGATACGG 51220 Query 222302 -GCA--GACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTG 222358 ||| || || |||||||| || || ||||||||||| ||| |||||||||| Sbjct 51219 TGCACGTTCAGACCAATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTA 51160 Query 222359 TCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGA 222418 || ||| ||||| ||| ||| ||||| | | | || || ||||| |||| || Sbjct 51159 TCGTAGATTCCCTCAATACTGTCGTCCTTCATATCGACCAAGAAGCAAGATGACAATTGG 51100 Query 222419 GATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGAC 222478 | | | || | |||||| || ||||||||| || ||||| ||| | || ||| Sbjct 51099 GGCTGAGGGGTGCCGGCGTTGAAGAGCGTGGGAGAAGCATGTGTGAAGAATTTGCTGGAC 51040 Query 222479 ATCAGATCGTACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAAT--CTGCATGGCGC 222536 ||||| | ||| ||||| | ||||| |||| | || || ||| | || | | | Sbjct 51039 ATCAGGTTGTATGTCTCCAAGACTCGCTCGATATCATCACCCCAAATACCAACA-GACAC 50981 Query 222537 ATCTCATGTACATGTACTGGGGCCTCTCCACA--GGACCCTTGGAGCTGGAGAGCAGGTA 222594 | | |||| ||||| ||| || | ||| ||| || | | || ||| ||||| Sbjct 50980 A-CGCATGATCATGTGCTGAGGGCGCTCGACAATCTTACCGTCAATCT--TGAGGAGGTA 50924 Query 222595 CGATTTTTCCAGAGTCTTGAACCCAAAGTA 222624 ||| |||| ||||||||| |||||||| Sbjct 50923 TGATCGCTCCAAAGTCTTGAAGCCAAAGTA 50894 Score = 87.8 bits (96), Expect = 3e-12 Identities = 128/181 (71%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 221116 GTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGG 221175 ||| || || ||||| || || | ||| || | | ||||| | ||| || ||| | || Sbjct 52378 GTTGACAACCTGGAACTCACCAGCGAGAACACGTCGTTGGTAGATGTTGGAGGTGTAGGG 52319 Query 221176 TTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCAC 221235 |||| || ||||||||||||||| ||||| | || ||||| || ||||| || || | Sbjct 52318 CTCGAAGCACTCGTTGTTGCCCAGAATCTGGGAGGTACTGGCAGTAGGCATAGGAGCAAG 52259 Query 221236 CAGCAGACTGTTGCGCAGTCCGAATCTATTGATGGACTTTCTCAGCGTGTTCCAGTCACA 221295 ||||||||||| || | ||| | | |||| || || || || | |||||| || Sbjct 52258 GAGCAGACTGTTACGGATGCCGTGTGTCTTGACTTCCTCTCGAAGAGTCTCCCAGTCCCA 52199 Query 221296 G 221296 | Sbjct 52198 G 52198 >seq204 Length=536571 Score = 194 bits (214), Expect = 3e-44 Identities = 395/584 (68%), Gaps = 7/584 (1%) Strand=Plus/Minus Query 25463 TAACACACAAAGATATAT--GGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGC 25520 ||||| || | |||| || || | ||||||||||||||| | || |||||| || Sbjct 426079 TAACAGACCATGATAGATTTGGCAAATGTACAAGAAGGCTGAGGCTTCCTTCTGGACTGC 426020 Query 25521 CGAAGAGATTGATCTGGCCAAGGACATGGACGGCTGGTAC----GCTCTATCCAAAGACG 25576 || ||||||||||| ||||||| | ||| |||| || || || | || | Sbjct 426019 TGAGGAGATTGATCTTTCCAAGGATCTCCACGACTGGAACAACCGC-CTGACTGCCGATG 425961 Query 25577 AGCAGCATTTTCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACG 25636 ||||| || || || | | || ||||| || |||||||||||||| || |||| Sbjct 425960 AGCAGTTCTTCGTCTCTCACATCCTTGCTTTCTTCGCTGCCTCTGATGGTATTGTCAACG 425901 Query 25637 AGAATCTGTGCGAGAGATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACG 25696 |||| || |||| |||||| | || || ||| | ||||| || ||||||| Sbjct 425900 AGAACCTCGTCGAGCGATTCAGTGGCGAGGTCCAGATCCCCGAGGCTCGTTGCTTCTACG 425841 Query 25697 GTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGT 25756 | |||||||| || || || | ||||| ||| || || ||| | || | Sbjct 425840 GCTTCCAGATCATGATGGAGAACATCCACTCCGAGACCTACTCCCTGCTCATTGACACCT 425781 Query 25757 ACATTACAGACGTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCA 25816 |||| | || |||| || || || ||| ||||| ||| ||| ||| ||| Sbjct 425780 ACATCAAGGAGCCCGCCCAGCGAACCTACCTCTTTAACGCCATTGAGACCATTCCCTGCA 425721 Query 25817 TCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCG 25876 || | |||||| |||||||| |||||| | || | | | |||| | Sbjct 425720 TCCGAAAGAAGGCCGACTGGGCCATCCGATGGATCCAGGATAAGGACTCCTCCTTTGCCC 425661 Query 25877 AGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCA 25936 |||| || || ||||| |||||||| ||||| ||||| ||||| ||| | || || | | Sbjct 425660 AGCGTCTCGTTGCCTTCGCTGCTGTTGAGGGTATCTTCTTCAGTGGTGCCTTCGCCTCTA 425601 Query 25937 TCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCA 25996 |||||||||||||| || || ||||||||| ||| ||| ||||||||||||||| Sbjct 425600 TCTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGTCTGACCTTCTCCAACGAGCTCATCT 425541 Query 25997 GCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTAC 26040 | || |||||||| |||| || ||||||||||| ||| || Sbjct 425540 CTCGTGATGAGGGTCTTCACACTGACTTTGCCTGCCTCCTCCAC 425497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928831645235520