Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001703455 .1_202016-08-10] 1,133 sequences; 48,659,641 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq207 123 2e-22 seq613 91.5 1e-12 >seq207 Length=801058 Score = 123 bits (136), Expect = 2e-22 Identities = 161/220 (73%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 |||||||||||| || | || || ||| ||| || || || || || | ||||| Sbjct 248000 ACGAAGACGGAGAACCAAGTGGAGAGTAGATTCCTTCTGAATGTTGTAGTCGGAAAGAGT 248059 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 || | ||||||||||||||| ||||| || || || || |||||||| |||||||| || Sbjct 248060 TCGGCCATCTTCAAGTTGCTTGCCAGCGAAGATGAGTCGCTGTTGATCGGGAGGAATACC 248119 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 |||||||| || ||||| || ||| ||||| ||||| | || | | ||| | Sbjct 248120 CTCCTTGTCCTGGATCTTGCTCTTCACATTATCAATGGTATCGGATGACTCGA-CTTCCA 248178 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | ||||| || || || ||||| ||||| ||||| ||||| Sbjct 248179 GAGTAATGGTCTTTCCAGTGAGGGTCTTGACGAAGATTTG 248218 Score = 107 bits (118), Expect = 1e-17 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| || ||||| || |||||||| ||| ||| || || || || || || || || Sbjct 248228 ACGGAGGCGGAGGACGAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCGGCAAGGGT 248287 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 || | ||||| ||||||||||||||||| || || || || || |||||||| || || Sbjct 248288 TCGGCCGTCTTCGAGTTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGAGGGATGCC 248347 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 |||||||| ||||||||| || ||| || || ||||| | | | | |||| Sbjct 248348 CTCCTTGTCCTGAATCTTTGACTTAACATTGTCGATGGTATCGGACGACTCGA-CCTCAA 248406 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGA 480762 | || || || || || ||||| ||||| |||| Sbjct 248407 GAGTGATGGTCTTGCCAGTGAGGGTCTTGACGA 248439 Score = 100 bits (110), Expect = 2e-15 Identities = 114/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 |||||| | ||||| ||||| || |||||||| ||||||||||| ||||| || ||||| Sbjct 247838 ATCTTCCAACTGCTTACCAGCGAAGATAAGACGCTGTTGATCAGGGGGAATACCCTCCTT 247897 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736 ||| |||||||| || || || ||||| ||| || |||||||| || Sbjct 247898 GTCCTGAATCTTGCTCTTCACGTTGTCGATAGTGTCACTGGACTCGACCTCAAGGGTGAT 247957 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || |||||||||||||| || ||||| || Sbjct 247958 GGTCTTTCCGGTGAGAGTCTTCACAAAAATCTG 247990 >seq613 Length=1729140 Score = 91.5 bits (100), Expect = 1e-12 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 474744 TTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAA 474803 ||||||| || || || || || |||||||| |||||||| || || ||||| || | Sbjct 649075 TTACTGTCCCCGCCTACTTCAACGATTCTCAGCGTCAAGCTACCAAGGATGCTGGTCTCA 649016 Query 474804 TTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATG 474863 | || ||||| || ||| | || || || || || || || || ||||| |||| || | Sbjct 649015 TCGCCGGTCTCAACGTTCTCCGAATCATCAACGAGCCTACTGCTGCCGCCATTGCCTACG 648956 Query 474864 GTCTTGATAAGAA 474876 ||||||||||||| Sbjct 648955 GTCTTGATAAGAA 648943 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268130600132684